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dnbaker
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dashing2
Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
MIT License
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#86
LinoHofstetter
closed
2 months ago
0
v2.1.20: Apple Silicon + Edlib fixup
#85
dnbaker
closed
4 months ago
0
dashing2 sketch --parse-by-seq doesn't work with --save-kmers
#84
CodeSteph
opened
5 months ago
0
--parse-by-seq bug fix + orderminhash bug fix
#83
dnbaker
closed
1 year ago
0
Sketching/comparing never completes on specific Fasta file
#82
matnguyen
closed
1 year ago
4
Reduce memory usage in --parse-by-seq
#81
dnbaker
closed
1 year ago
0
Expected memory usage
#80
matnguyen
opened
1 year ago
4
Multi-fasta functionality
#79
matnguyen
closed
1 year ago
3
Compilation update: namespace-quality fmtlib usage.
#78
dnbaker
closed
1 year ago
0
Segmentation fault error
#77
kaysahu
opened
1 year ago
1
please allow builds without recursive cloning
#76
joelb123
opened
1 year ago
1
compilation fails under gcc > 12
#75
joelb123
opened
1 year ago
1
Create LICENSE
#74
dnbaker
closed
1 year ago
0
Please include license file
#73
joelb123
opened
1 year ago
1
Bug fixes, remove -flto in static builds + logging changes
#72
dnbaker
closed
1 year ago
0
dashing2 for metagenome
#71
jianshu93
opened
1 year ago
1
Cleanup pt2
#70
dnbaker
closed
1 year ago
0
Cleanup
#69
dnbaker
closed
1 year ago
0
--outprefix option and cmp subcommand are invaild
#68
XiaomingXu1995
opened
1 year ago
7
dartminhash implenmentation
#67
jianshu93
opened
1 year ago
3
M1 support + --union-size output option.
#66
dnbaker
closed
1 year ago
0
Silicon/M1/M2/arm64?
#65
gaboentropy
closed
1 year ago
5
Add CodeQL workflow for GitHub code scanning
#64
lgtm-com[bot]
closed
1 year ago
0
Differences in mash distances between dashing2 vs dashing1/mash
#63
tsp-kucbd
closed
1 year ago
6
Fix bug in cmp --presketched mode
#62
dnbaker
closed
2 years ago
0
long flag sanity check, plus missing 'L:' in getopt_long
#61
dnbaker
closed
2 years ago
0
Specifying `--verbose` tends to give segmentation fault
#60
BenLangmead
closed
2 years ago
2
`sketch -L` doesn't work
#59
BenLangmead
closed
1 year ago
1
aminoacid distance to AAI?
#58
jianshu93
opened
2 years ago
2
What are the units for `--countmin-size`?
#57
BenLangmead
opened
2 years ago
1
Fix if/else when setting # superregisters to sample
#56
BenLangmead
closed
2 years ago
1
Print cardinality estimate
#55
BenLangmead
opened
2 years ago
0
Avoid double-printing argv[0]
#54
BenLangmead
closed
2 years ago
0
No $(LIB) with -c
#53
BenLangmead
closed
2 years ago
0
Switch to PMH3, add cmp usage.
#52
dnbaker
closed
2 years ago
1
no dashing2 cmp help info
#51
jianshu93
opened
2 years ago
2
ARM neon support.
#50
jianshu93
opened
2 years ago
1
large Metagenome comparison bad_alloc
#49
jianshu93
opened
2 years ago
2
D10
#48
dnbaker
closed
2 years ago
0
how to get assymetric matrix for containment index?
#47
dejsha
opened
2 years ago
2
Use mash distance for exact k-mer set/countdict comparisons
#46
dnbaker
closed
2 years ago
0
--mash-distance outputs similarity with --set option
#45
dejsha
opened
2 years ago
3
Dev8
#44
dnbaker
closed
2 years ago
0
Dev7
#43
dnbaker
closed
2 years ago
0
Dev6 - Contain main tweaks
#42
dnbaker
closed
2 years ago
0
Dev5: Count-Filtered pre-set SetSketch, Better Caching
#41
dnbaker
closed
2 years ago
1
Fqfeeder contain
#40
dnbaker
closed
2 years ago
0
Sketch compressed - bug fix + byseq
#39
dnbaker
closed
2 years ago
1
Add direct setsketch generation options
#38
dnbaker
closed
2 years ago
1
Add fasta-format de-duplication in --parse-by-seq mode
#37
dnbaker
closed
2 years ago
0
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