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I am using the default [**minSeq+H**](https://www.dropbox.com/s/6p9o42yufx2vkae/miniSeq%2BH.tar.gz?dl=0) database. I have run the following commands to classify a FASTQ file:
```
metamaps mapDirectl…
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Is kraken suitable for taxonomic analysis of long reads (nanopore sequences) ?
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If the MetaMap server (mmserver) is running on different machine other than the one the Java api client is running, we can specify the hostname of the MetaMap server when instantiating the api.
`…
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hello, I am testing this package, but got the following error. Wonder you have a solution? Thanks.
MetaMap -l "Definition and classification of chronic kidney disease" Q true t true r '["AIR","AOD"]'…
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This is not building due to a missing file
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] --------------------------------------------…
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Hi, any chance can we convert metamaps results to kraken style report file?
thanks
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After finishing `mapDirectly`, then I try to continue `classify` step with the code:
```
metamaps classify --mappings ./metamap_classification_results --DB ./database/metamap_ecoli_homos/ecoli_hom…
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**Feature Request**
It would be really nice to have a compiled executable for linux as well as a conda package for MetaMaps. MetaMaps is challenging to install on a managed server without su privileg…
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In iRODS file metadata is all stored in a row format, rather than as columns, to allow any data to be stored about the files (so objects have been defined, but not their attributes).
The generic desig…
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kknee updated
9 years ago