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GO frequently makes TC on classes that reference CL. Because the same CL class is reused in multiple GO classes this violates [DRY](https://douroucouli.wordpress.com/2019/03/09/ontotip-lift-borrow-ste…
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UD download:
https://microbiomedb.org/mbio/app/workspace/analyses/EDAUD_4104431/LGyynNS/download
500 in microbiome, Unable to run SQL
ORA-00904: "EUPATH_0009353_BACTERIA_BACTERIA_UNCLASSIFIED_ACT…
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I've noticed three genes where the value for `ensembl.gene` does not begin with `ENSG`:
```
https://mygene.info/v3/gene/263?fields=ensembl
ensembl.gene appears to actually be ENSG00000237801
{"_…
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Demo site's downpage sample downloads (FASTA, mysql, etc) are broken they point to:
ftp://ftp.ensemblgenomes.org/pub/release-demo/metazoa/fasta/melitaea_cinxia/dna/
However the "release-demo" fold…
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## Describe the issue
VEP fails with the error message "Can't call method "each_seq" on an undefined value at \ensembl-vep/Bio/EnsEMBL/Variation/TranscriptHaplotype.pm line 451, line 75759."
Imme…
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Hello,
I'm trying to use bioMart to retrieve the gene names from Apis mellifera from Ensemble. I'm trying to analyze the data generated by Kallisto using Sleuth.
I encounter the error posted in …
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> parse
@mhemberg
Hai did you get restults by running these comments
"singularity exec docker://dfam/tetools:latest BuildDatabase -name sequence_index -engine ncbi sequence.fa…
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Hello, do I have to choose which datasets to include, or could I use them all? I am running an analysis on Chelonia Mydas.
The lineage is
```
Lineage( full )
cellular organisms; Eukaryota; Opi…
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Hello,
I'm trying to run analyze_diff_expr.pl but I got the following error:
**[1] "Reading matrix file."
Error in is.null(Rowv) || is.na(Rowv) :
'length = 2' in coercion to 'logical(1)'
Ca…
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Is there a way to import the results from [MAPseq](https://github.com/jfmrod/MAPseq)?
Here is some example output:
```
# mapseq v1.2.6 (Mar 24 2020)
#query dbhit bitscore identity matches mismat…