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From Allison Heath and Eric Wenger:
Good morning, quick question on what the Ontology WG recommends for c2m2 OBI id's in several cases where we are not seeing matches.
Kids First data has several…
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#### Kristie inquired regarding the adapter trimming from the vendor (who provides the sequencing library kit) and the following information was shared with us:
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Hello Kristine,
To trim…
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Original Author: Eli Fisker
Original Link: https://getsatisfaction.com/eternagame/topics/-strategy-market-switch-obligatory-switching-base-pairs-in-ms2-fmn-switches
Intro
As a rule of thumb the obli…
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It would be nice to have a small set of functions to help users orient to a KGs (ie, handled by an engine) contents for effective querying. Some ideas:
summarize_nodes - count nodes in the KG, brok…
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Hi, I am wondering how to generate "human_mirna_SNP_pseudo_miRBase.fa" in "fasta.Libs" directory. It is quite different from "human_mature_miRBase.fa" as many miRNA ids are different between them in a…
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Hello,
Question about 'RNA sequencing assay' (OBI:0001177) and 'RNA-seq assay' (OBI:0001271). In OBI, 'RNA-seq assay' is a subclass of 'RNA sequencing assay'. Are there examples of assays that fal…
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read_json almost never work for me. Here is for instance a json that is totally valid but breaks read_json
```
{
"id" : "GSM1698568",
"gse" : [
"GSE69360"
],
"title" : "Biochain_Adu…
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Brought to my attention by Colin Logie
**What is the SO term name and accession?**
intronic_splicing_silencer (SO:0002056)
exonic_splicing_silencer (SO:002058)
Both are children of silencer (SO:…
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Hi,
I have been receiving the following error while executing miRDP2-v1.1.4_pipeline.bash even after formatting the input fasta files:
Use of uninitialized value $id in hash element at bin/scripts…
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Hi Dr. Axtell,
Thanks for developing this useful software!! I've been attempting to utilize shortstack4.0.3 for both known and de novo miRNA prediction for wheat sRNA data. However, I encountered a…