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In the paper Changwei et al. 2024 the process of obtaining .fasta files from the other resulting files is described and used to get the published results. However, the resulting files listed here do n…
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Hi,
Thanks for writing a great programme. I am sadly running into an issue which I have so far been unable to resolve or track down the precise cause. I am using MitoHifi on a HPC that uses the slu…
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I installed mitoz v3.6 using conda. The test run was ok. I wanted to generate mitogenome from a SE data. Below is my command,
```
mitoz all --outprefix PhoSp1_trimmed --clade Arthropoda --genetic_…
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Hi there,
Is there an output for estimated coverage of each mitogenome? Sorry, if I missed it, but I cannot seem to find it!
Thank you,
Andrea
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**Question or Expected behavior**
I have generated genome assemblies for two different species of butterfly. The assembly sizes are ~700-800Gb after running purge_dups. In both assemblies I find that…
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singularity exec --bind /home/eniac/madhu_mito/:/home/eniac/madhu_mito docker://ghcr.io/marcelauliano/mitohifi:master mitohifi.py -r /home/eniac/madhu_mito/A5_mitochondria_genome.fastq -f /home/eniac…
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I am assembling turtles mitogenomes and in some cases the output I obtain is a "Circularized genome", actually made up of 2 non overlapping contigs: in all these cases, the interruption is in correspo…
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Hello,
I have been trying to assemble a full mitogenome with MitoFinder using megahit. I have been able to assemble a contig of ~16,500 bp, which should be quite close to the size of the genome. Howe…
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Can I use this software on an already assembled partial mitogenome. The genome was sequenced as metagenomic environmental sample using Oxford Nanopore long read technology. Any help is appreciated
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Great tool. I have been trying to find info about coverage of the assembled mitogenome (either partial or complete) in the output. Any advice? Any chance coverage can be provided in a future version? …