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Dear Dr. Li,
Firstly, I would like to express my gratitude for creating such excellent tools.
I have utilized TRUST4 to analyze my different spatial TCR data set (TRA and TRB are enriched separ…
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Hello again!
I want to process the sequencing data obtained by Croce _et al_ in **"Phage display profiling of CDR3β loops enables machine learning predictions of NY-ESO-1 specific TCRs"** with TRUS…
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Hi,
I am working with mouse B cell repertoires processed with MIXCR (for consistency for this project I am still using MIXCR v3.0.13). The alignment was done on the VDJregion so I can export all th…
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Hi,
Just wondering how difficult it would be to create tags for other species. I am currently using Repseqio to create libraries for MiXCR but want to do a comparison of analysis. Is there a pipeli…
tprkp updated
7 months ago
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May I know how to use MIXCR output as input of LymphoSeq?
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I could not find PUB_public_clone_record_from_mixcr_output.tab.gz inside the repository.
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## Summary
There are a total of 31 V regions in the TCR Beta receptor locus. 11 of them are pseudogenes and 20 are transcribed genes (still need to confirm this). We only use primers for the 20 trans…
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Hello. Thanks for the great work on documenting MiXCR ! I believe it's not an easy task with all the parameters and options for each functions and presets !
One question though. I wonder if it's po…
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### Description of feature
Apparently this is a thing now (e.g. 10x spatial transcriptomics + mixcr, e.g. in [this paper](https://www.sciencedirect.com/science/article/pii/S1074761322000814?via%3Dihu…
grst updated
5 months ago
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## Checklist before submitting the issue:
- [ ] The issue is strongly related to the MiXCR software
- [ ] The issue can be reproduced with [the most recent version](https://github.com/milaborato…