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Any ideas for
- improvement
- new functionality
- changes
are welcome.
Feel free to open a pull request.
JB-MS updated
3 years ago
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Hi,
I am processing 550 files from a Q-Exactive lipidomics experiment where data dependent MS/MS data was collected. I only want to use the MS1 data to generate a peak area data matrix. I have conv…
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I'm pretty much a `mzR` newbie (so this is probably a question and not a bug) but one of our lab's scripts uses the `peaks` function. I have created some testdata by filtering "quality" MS2 scans from…
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I just used the demo code to try to see if this peak evaluation function can be implemented in my environment, but I encountered a warning that `makeXcmsObjFlat `cannot be found, and I have no way to …
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Dear @jorainer
following up on the conversation in the slack channel, here comes the issue in the `Spectra` package.
The idea was to be able to calculate HUPO-PSI-defined quality metrics (http…
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Hello, and thank you in advance for any nudges, help or discussion.
I am trying to run alignment on three large Proteomics datasets using Obiwarp. They're each about 800 Mb. I am fairly familiar wi…
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Hi, I'm new to HPC and also MZmine 3. I would like to run batch mode to process a large number of samples for alignment and peak picking. I found command line instructions for Windows and MacOS (https…
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Dear Rick and Team,
I would like to ask for help regarding how the scores for each feature are calculated from the generateCompounds() function. My main objective is to classify the features identi…
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When only one scan is selected by [detectInfusionScans](https://aberhrml.github.io/binneR/reference/detectInfusionScans.html) (which can happen if `thres` value is too high), BinneR will crash during …