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Dear all users of decontam,
I am very new to this and i am having some issues with the processing of my data,
I have obtained a feature table using EPI2ME 16s Workflow.
But i dont have OTU i h…
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Hello, I'm a graduated student studying bioinformatics in South Korea.
I'm trying to do detect extrachromosomal DNA (ecDNA) in nanopore long-read targeted sequencing data.
I followed the workflow …
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I am interested in testing `funpfrofiler` for long reads (Nanopore; ~Q20+ chemistry). I have paired QCd Illumina data (which were also used for reconstructing high quality MAGs) as a comparator. In th…
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Hi,
is this pipeline suited for nanopore data?
kind regards,
T.
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Hi, this looks interesting.
Is there any reason the tool would not work for nanopore data called by Megalodon (rerio) and modbam2bed ?
i.e. is it restricted to illumina bisulfite data?
Thanks…
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Tools on which we are working currently:
* https://github.com/nanoporetech/scrappie
* nanoplot: https://github.com/bgruening/galaxytools/pull/771
Tools that are already integrated:
* nanopolis…
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Dear Dr Jue Ruan,
I am using wtdbg2 with the new nanopore Q20 reads. I tried setting -x ccs , but got a very fragmented and incomplete assembly.
May you please suggest which parameters should I t…
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I have run the Falco using the following commands
falco --nano reads.fastq.gz
I am using nanopore reads. Html report says it is using the sanger/illumina encoding even though I have specified the na…
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Search SRA
"oxford nanopore"[Platform] AND mus musculus[Organism] AND "genomic"[Source]