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snakemake-workflows
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cyrcular-calling
A Snakemake workflow for ecDNA detection in Nanopore or Illumina sequencing reads derived from DNA samples enriched for circular DNA.
https://snakemake.github.io/snakemake-workflow-catalog/?usage=snakemake-workflows/cyrcular-calling
MIT License
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Are the genomic output coordinates 0 or 1 based?
#19
julia-luz
opened
3 weeks ago
0
chore(main): release 2.1.0
#18
github-actions[bot]
closed
3 months ago
1
feat: allow for all caps platform spec
#17
dlaehnemann
closed
3 months ago
1
fix: Expose gene annotation params
#16
tedil
opened
4 months ago
0
Required layout for units.tsv and samples.tsv is unclear
#15
julia-luz
opened
5 months ago
1
Optional params missing from config file
#14
julia-luz
opened
5 months ago
1
Regulatory annotation download link is hardcoded
#13
julia-luz
opened
5 months ago
2
Snakeploy Installation Fails
#12
julia-luz
opened
5 months ago
1
Unexpected keyword template_engine
#11
alexpmagalhaes
opened
7 months ago
4
fix: move scenarios into `workflow/resources`
#10
dlaehnemann
closed
1 year ago
0
more generic repeat annotation retrieval
#9
dlaehnemann
opened
1 year ago
1
feat: better tables, CI testing, wrapper and env updates, reference cleanup, release-please, conventional commits, CITATION.cff, Zenodo activation
#8
tedil
closed
1 year ago
0
Run failed
#7
FuyuLi
closed
1 year ago
3
chore: Address snakemake lints
#6
tedil
closed
1 year ago
0
fix: copying annotation INFO fields from cyrcular to VCFs obtained from varlociraptor preprocess
#5
tedil
closed
1 year ago
0
fix: make sure records are written even when annotation is missing
#4
tedil
closed
1 year ago
0
Include graph plots
#3
tedil
closed
1 year ago
0
Datavzrd report
#2
tedil
closed
2 years ago
2
fix: update varlociraptor to 5.2.0, use `--pairhmm-mode homopolymer`
#1
tedil
closed
2 years ago
0