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### Description
In cases where the predicted taxa are at rank below the expected taxa, this will be predicted as FP.
For example in the foodme1 dataset, kangaroos are given at the familly ranks becaā¦
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## Bug report
I am running nf-core/taxprofiler on gitpod with conda.
When I run the basic test profile: `nextflow run nf-core/taxprofiler -profile test,conda --outdir results/`, I get the Overlā¦
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Five years ago there was a closed bug that was asking for Nextflow to be incorporated into Homebrew. After watching my team of mixed skillsets, scientists and engineers, struggle though a series of inā¦
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Hi @adamrtalbot ,
As part of our progressive approach to training, I thought it might be good to create a separate protected branch, `no-nextflow-schema` or something similar, that is missing the nā¦
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### Description of the bug
ERROR ~ Validation of pipeline parameters failed!
-- Check '.nextflow.log' file for details
The following invalid input values have been detected:
* --hic (SB1031Hiā¦
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### Description of the bug
When the `--sortmerna_index` flag is provided (e.g., with a directory of prebuilt rRNA indexes) along with the `--remove_ribo_rna` flag, the pipeline will do the initial tā¦
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Is it possible to comment a section of code, to not be evaluated by the Nextflow linter? This is in the same vein as the `#noqa` comment code to ignore Python PEP8 warnings?
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The user should be able to specify a "target version" of Nextflow, either through client configuration or the `manifest.nextflowVersion` config option. Language features in the Nextflow codebase can tā¦
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I have installed nextflow and docker, and I am using the following code to test if everything is set up properly:
**nextflow run pgscatalog/pgsc_calc -profile test,docker**
The code runs for a mā¦
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When running a stub run for testing pipelines, some tools (such as `ANTs`) return an `exit code status 1` when calling the help script. Example:
```bash
Test [91f130a6] 'Connectomics + tracking prā¦