-
A tool to validate whether a dataset follows the NGFF spec. Per-version validation. Generate a visual and programmatic summary required and optional features and any errors related to types, etc.
-
It would be great if this library could access ome-ngff data stored on AWS S3, google GCS, etc. Since you have `fsspec` in your dependencies, I think this would be doable without drastic changes.
-…
d-v-b updated
6 months ago
-
This is a tracking issue for some of the current issues when having a SpatialImage of circa >10 channels in SpatialData:
- [ ] **Vizarr, Avivator, Vitessce fail when loading SpatialImage**
- T…
-
Ref https://github.com/fractal-analytics-platform/fractal-vizarr-viewer/issues/20.
1. Review the current situation: how are we setting the `active` attribute of a channel?
2. Decide how we should …
-
-
A discussion in the Bioconductor slack channel was wondering whether RBioFormats could already be used to read OME-Zarr format. It seems that with the additional https://github.com/ome/zarrreader jar,…
-
@haesleinhuepf given your call for contributing tests: Are additional small tests on extracting information from OME-Zarrs in scope for this repo? I'd be happy to add some to encourage LLMs to learn a…
-
Privet! I have a issue with F8D motherboard.
I’m trying to add a Wifi card to the „sata m.2 ngff“ slot but the system does not recognize the card in this slot. If I put it into the NVMe slots it work…
-
When processing iSIM + BF data, I have found the need for a function to rename channel names. So far, since I have had to do a crop, I rename the channels there, but it would be nice to have a CLI fun…
-
When exporting with OME-NGFF metadata, the current plugin produces something like this:
```
{"path":"image/s0","axes":[{"type":"space","name":"x","unit":"micron"},{"type":"space","name":"y","unit"…