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- [ ] move to a different org
- [ ] provide better documentation on each element
- [ ] make it easier to maintain the java
- [ ] provide links to other reference implementations
- [x] find out how…
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In this file: https://github.com/monarch-initiative/mondo-ingest/blob/main/src/ontology/lexmatch/unmapped_doid_lex_exact.tsv
exact lex-match is based on MESH x-ref
example:
subject_id | subject_la…
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Originally seen in #346.
Using a Bioportal ontology (like bioportal:SNOMEDCT) as an annotator works fine on its own.
If used in a value set expansion, e.g., with a `reachable_from`, it tries to down…
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I made a start on this here:
https://github.com/INCATools/ontology-access-kit/blob/d1c4a46c3efda1779fd587d9b79f70db87bc2aa9/src/oaklib/conf/omo-to-skos.sssom.tsv
but I would rather maintain thes…
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- This illustrates the need for view generation and its power over a large part of the graph https://docs.google.com/document/d/1xpzQUAJVzwGjWenLlLYrgYyinTaHRZJy_77sWdLR0AY/edit#bookmark=id.uri4r2…
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# Overview
Followed from:
- #367
We have a preliminary dumper: https://github.com/INCATools/ontology-access-kit/releases/tag/v0.1.57
# Bugs
## Bug list
- [ ] 1. CLI doesn't work; Only the P…
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given:
```json
{
"graphs": [
{
"id": "test",
"nodes": [
{
"id": "GO:0005773",
"lbl": "vacuole",
"meta": {
"definition":…
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I'm trying to calculate semantic similarity profiles using Phenio ontology comparing different term sets
1. HPxHP
2. HPxMP
2. HPxZP
- HP term set: 17097 entries
- MP term set: 13809 entries
…
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## Summary
I recently added a `.PHONY` `make` target called `python-install-dependencies`. It upgrades to the latest `pip`, but I didn't think through things enough, and I didn't realize that my loca…
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We need a plan for the 0.4 release. Please edit the top note on this issue in place rather than making a long long long thread to read
@matentzn preferred path:
1. We clearly communicate that mi…