-
## Overview
In my opinion, the language of the [`robot convert docs`](http://robot.obolibrary.org/convert) does not entirely make it clear that all of the formats listed are both valid input formats …
-
When trying to import the unified phenotype ontology (UPHENO), I run into some errors about `Too many cyclic paths (> 1000).` Is there something different about this ontology? If so, is there a way i…
-
As discussed in the obo-community's ontology-access-kit thread: https://obo-communitygroup.slack.com/archives/C03D93DEALA/p1727706503549479
@cmungall did you already address this in [graph projecti…
-
Motivation: we want to be able to see the effect of making changes on inferences. This would be accomplished by diffing the inferences between two ontologies.
This operation would be trivially the …
-
loading local OboGraph JSON files following [examples from the notebooks](https://nbviewer.org/github/biolink/ontobio/blob/master/notebooks/Intro_Local_Ontologies.ipynb) or using local obograph JSON f…
-
The main use case for OAK is class exploration, where we use the relation-graph/owlstar mapping from OWL to Edges. But it would also be useful to allow for exploration of OPAs.
Use cases:
OBO:
…
-
NeurIPS'21 brought a bunch of KGE models. This issue is for ConE.
### Publication Link
[Modeling Heterogeneous Hierarchies with Relation-specific Hyperbolic Cones](https://papers.nips.cc/paper/20…
-
This issue is a bit abstract at the moment but want to start the conversation.
I absolutely love the UniProt user interface. As a bioinformatician, I can browse the website using advanced search, f…
-
This does not pertain to the patterns but to the release workflows of each pheno ontology.
Assuming that we have a shared release workflow where a basic obo file is available, as well as a complete…
-
We should include shapes for the model itself.
I think we should make all assumptions explicit. E.g. should every model have a title? a status?
Should we have separate shapes for a curated model…