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see e.g. https://github.com/OpenMS/OpenMS/commit/4e41abd4a49052549aa9f4547fb8ed1bd534b14d
Where `in_` would lead to invalid target errors.
This needs to be done in all "*.pyx" files in the OpenMS/…
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Wrapping:
- [ ] ./src/openms/include/OpenMS/METADATA/IonSource.h
```
static const std::string NamesOfPolarity[SIZE_OF_POLARITY];
static const std::string NamesOfInletType[SIZE_OF_INLETTYPE];
stat…
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1. Workflows available to download: https://openms.readthedocs.io/en/develop/docs/downloads.html#workflows.
2. The user tutorial is being added to OpenMS/OpenMS-docs. Ref: https://github.com/OpenMS/O…
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### DDA
| Process name | Link to quantms local module | Call | Tool|Test data | Test data (chunked)|
|-----|-----|-----|-----|-----|-----|
| cdecoy_pr | NA | [create_decoy](https://github.com/pr…
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## TODOs
- [ ] https://github.com/OpenMS/OpenMS/issues/6197 @tapaswenipathak
- [ ] https://github.com/OpenMS/OpenMS/issues/6198
- [ ] https://github.com/OpenMS/OpenMS-docs/issues/116 @jpfeuffer @t…
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Hi, I'm setting up a FreeBSD distribution for mass spectrometry data processing; the next version of MassyPup(64): https://peerj.com/articles/1401/
Do you have a hint on how to port MZmine? General…
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de.openms.knime master should be kept in parallel with the openms master.
This means that after a release, de.openms.knime master should be set to the de.openms.knime develop branch and tagged with t…
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Running on a fresh Ubuntu 24.04 install, cmake passes but making fails partway through:
```
[ 29%] Linking CXX shared library ../../lib/libOpenMS.so
/usr/bin/ld: cannot find -llzma: No such file or…
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I have put this separately, because it needs more involvement from the application authors.
**GENERAL**
Application descriptions need to be more uniform, like 2-3 sentences per application about w…
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For a while, we have been avoiding `Protein Group` modelling in the psm and feature in the format. @jpfeuffer triggered this issue a long time ago. Our main tools DIA-NN, OpenMS TMT, and OpenMS LFQ pi…