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It would be really useful to see the overlapping phenotypes for orthologs on the orthologs tab on the gene pages. this would probably depend on #351, and would be distinct from the grid view of #325.…
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Dear Authors,
OrthAgogue is a really useful software, specially in terms of its speed for
generating orthology relationships in large datasets. My compliments! I ran
OrthAgogue on a large datas…
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Hi @HajkD ,
I'm using the `orthologs` function with `ortho_detection = "RBH"` to detect orthologs for a `query_file` containing 8 protein fasta sequences in multiple `subject_files`.
For easier…
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PomBase have made curated associations to MONDO terms.
It would be useful to also load instead all MONDO associations to human proteins.
We could use this query to cross-check our associations by …
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```
Dear Authors,
OrthAgogue is a really useful software, specially in terms of its speed for
generating orthology relationships in large datasets. My compliments! I ran
OrthAgogue on a large datas…
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For Release 76, Orthologs_HCOP.tar.gz was unzipped and untarred as a set of nested directories containing Orthologs_HCOP.
The full path is " target4/famlib/dev/PANTHER16.0/lib_16.0/ftp/Orthologs_HCOP…
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Hi, I have been trying to convert mouse genes to human orthologs. Please take a look at the code and error messages.
`
```
library(biomaRt)
musGenes sessionInfo()
R version 4.1.0 (2021-05-18)
…
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Orthologs/Paralog feature, orthomcl clustering of orthologs can be utilized to transfer annotation across organisms.
(a script tool using web services, but somehow automated)
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I have the correct species tree for an analysis and I would want orthofinder to use it to detect orthologs; it possible to specify a tree for orthofinder?