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Figure positioning and zooming is currently not possible. Scrolling is also currently impossible due to width/height limitations from AngularPlasmid. Use should be able to pan and zoom.
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### Main steps for adding new genome and annotation collections
# Genus/species/collection names:
Haplotype 1:
- Chamaecrista/fasciculata/genomes/ISC494698.gnm1.8Q19
- Chamaecrista/fasciculata…
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Hello, Professor Ou.
Recently, I have been using EDTA to annotate transposable elements (TEs) in multiple animal genomes. However, while some genomes can generate the .mod.EDTA.TEanno.sum file, oth…
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Hi,
I'm trying to separate my genomes into shared and unique genes between two groups, and while running query_pan_genome with the different parameters it seems to work. I get three spreadsheets am…
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Hi,
I two sets of isolates and am trying to find the differences between them. I have run the following script;
query_pan_genome -a difference --input_set_one ../path_to_set1/_.gff --input_set_two ..…
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### Main steps for adding new genome and annotation collections
# Genus/species/collection names:
What are the collection types and names? Example:
- Glycine/max/annotations/Lee.gnm3.ann1.ZYY3
…
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Hello, I am using Roary to generate a pan-genome with 682 .gff files obtained from Prokka.
The Roary command I'm using is python3 roary_plot.py --label mytree.newick the tree made by these command is…
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I am sorry about this question, because I know somebody asked this issue before, and the answer was the checking the directory.
But, I can not run the "query_pan_genome" properly.
I checked the …
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Hello,
I ran the test data in the login node of HPC cluster:
```
nextflow run /public/home/zyqi/pan-TE-analysis/GraffiTE/GraffiTE/main.nf \
--assemblies assemblies.csv \
--TE_library huma…
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### Main steps for adding new genome and annotation collections
# Genus/species/collection names:
What are the collection types and names? Example:
- Arachis/stenosperma/annotations/V10309.gnm1…