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Hello vg team
It is amazing the work you are doing.
I am relatively new to using vg and I would appreciate a little help with my question please.
I want to download an already constructed human pa…
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Hi,
I am having the following issue. Any help will be appreciated.
A problem with the BLAST results file /primerdesign/Lactobacillus_curvatus/Pangenome/results/primer/primerblast/primer_0_result…
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**1. What were you trying to do?**
Call variants from read support.
**2. What did you want to happen?**
Generate a VCF file.
**3. What actually happened?**
The command have been running…
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Make a "quick start" section in the main README file and move demonstrations of more complicated analyses to a GitHub wiki.
Example of a more complicated analysis to explain in the wiki: creating …
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Hi !
I have followed the **Minigraph-Cactus Pangenome Pipeline** to construct a graph-based pangenome and output the index using Giraffe. Additionally, I have used Giraffe to perform read mapping f…
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Hello! Out of curiosity, in the description of the pipeline you say that "Struo2 is designed to process one genome representative of each species, which is all that is required for generating the Krak…
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Hello,
I find there are a fewer SNP overlap rate between the callset form pangenome-graph-from-assemblies and the GATK results. What could be the reason? The article seems to only compare the abili…
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Hi @glennhickey:
I have got the vcf result from the minigraph-cactus pangenome pipeline. how can I get the coords of the SVs in the query genomes since there are only coor…
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Dear All,
I had read a paper entitled "A pangenome analysis pipeline provides insights into functional gene identification in rice". A very excellent article for pangenome construction in rice, I a…
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Hi,
I've generated the graph VCF (results/multisample-vcfs/graph-filtered.vcf) from assemblies by running the [pangenome-graph-from-assemblies](https://bitbucket.org/jana_ebler/pangenome-graph-from…