-
```
Hi, I managed to modify the bpipe-torque.sh in order to use bpipe on PBS
professional.
I have made 2 major changes:
1. line 194: qstat_output=`qstat -x -f "$1"`
because you need to use the -x…
-
### Description of feature
Dear nf-core & pangenome team,
I have a few questions about your great program.
Based on the link (https://github.com/nf-core/pangenome/blob/1.0.0/modules/nf-core/w…
-
hi is there any plans in adding a new pbs version in dockerhub. Last i checked in https://hub.docker.com/r/pbspro/pbspro/tags you only have 18.1 which was 3 years old.
Reason i ask i was trying to …
-
```
Getting an error where job seems to disappear from queue but status is not
changed in admin. May be associated with "eligible time" in the remote status
output:
comment
Not Running: Insufficien…
-
Ubuntu 18.04.4 LTS (GNU/Linux 4.15.0-88-generic x86_64)
at step 6 of INSTALLATION GUIDE
`$ ./configure --prefix=/opt/pbs`
`configure: error: Python must be version 2.6 or 2.7 ` appeared
…
-
```
Hi, I managed to modify the bpipe-torque.sh in order to use bpipe on PBS
professional.
I have made 2 major changes:
1. line 194: qstat_output=`qstat -x -f "$1"`
because you need to use the -x…
-
Snakemake version: 7.19.1
I am running a workflow submitting jobs to a PBSpro cluster. For some (currently unknown) reason, I get cluster submission errors like this:
`Error submitting jobscript (…
-
Hi Folks
Apologies if this has been discussed before.
Our national CHPC PBSPro cluster needs #PBS -P project_id for jobs to be submitted.
The -r passthrough for bcbio_nextgen.py does not work…
-
Hi,
I have got an error running the test with singularity, as shown below:
```
NXF_OPTS='-Xms1g -Xmx4g'
nextflow run hoelzer-lab/rnaflow -profile test,singularity
```
```
Launching `https:/…
-
Errors happens when configure on Centos 8.1
codes printed like below but openssl have already been installed with version 1.1.1c-2.el8_1.1.x86_64
checking for netinet/tcp.h... yes
checking openss…