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Here's a list of items that likely will need to be addressed if we want annoFuse included in Bioconductor
- [x] expand the vignettes (e.g. nice ideas could come from the current doc folder)
- [x…
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Save JSON containing all DocumentReferences for KF Gene Expression Summary files into this bucket: https://console.cloud.google.com/storage/browser/fc-be286b9f-3acf-4168-af6e-592df509391d/DocumentRefe…
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No instructions on use
_... appreciate it's not an "Issue", but I can't see anywhere to ask questions_
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#### What analysis module should be updated and why?
[`focal-cn-file-preparation`](https://github.com/AlexsLemonade/OpenPBTA-analysis/tree/master/analyses/focal-cn-file-preparation), specifical…
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Context: https://github.com/AlexsLemonade/OpenPBTA-analysis/issues/251#issuecomment-570622668
Multiple analyses including many (all?) of the molecular subtyping tickets and the OncoPrint plotting r…
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Some feedback:
-I think increment/decrement should be tied to the + and - symbol rather than the click, with the ability to set the max tied to a rightclick interface.
-Are you considering the abili…
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#### What analysis module should be updated and why?
Running the `sex-prediction-from-RNA-seq` module with the v13 kallisto data lead to the loss of feature names due to #474.
#### What cha…
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This issue is reported by @ginamawla. I am including Gina’s writing and visualizations here with some modifications for the issue.
#### What data file(s) does this issue pertain to?
Transcriptom…
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#### What data file(s) does this issue pertain to?
pbta-histologies.tsv
#### What release are you using?
v15
#### Put your question or report your issue here.
The `short_histology…
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#### What analysis module should be updated and why?
An incorrect matching here:
https://github.com/AlexsLemonade/OpenPBTA-analysis/blob/6bf301eea42a7f8812c3b14cee35a961097f8ecf/analyses/indepen…