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Hi, I'm following this notebook:
https://github.com/yaml2sbml-dev/yaml2sbml/blob/main/doc/examples/Lotka_Volterra/Lotka_Volterra_python/Lotka_Volterra.ipynb
After running
```
yaml_file_petab = …
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This issue regards the `petab_suite` branch.
I tried the Benchmark-Models-PEtab cases but Ipopt ran into problems with a few cases. @sshin23 : could you please download [Benchmark-Models-PEtab](https…
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**Which problem would you like to address? Please describe.**
Currently, PEtab does not allow to express nonlinear mixed effects models (i.e containing fixed (population) and random (patient-specific…
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related: #16 #540
If you are already familiar with this, you could skip straight to the "Feedback" section and share your thoughts.
A couple of (currently unofficial) PEtab extensions have been …
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It would be neat if one could integrate PEtab select's feature for model selection with models declared in Catalyst (similar as was done for normal PEtab models).
I am not fully familiar with PEtab…
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I have created an optimisation problem using PEtab.jl. This gives me a gradient, which I have tried to adapt to LiklihoodProfiler's format using
```julia
function loss_grad(p)
grad = zeros(9)
…
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A unique model hash/ID can be automatically generated from
- model subspace ID
- model subspace indices
Some helper function to convert such a hash/ID back into a model, given a PEtab Select prob…
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**Which problem would you like to address? Please describe.**
I often have simulation experiments where I not only have to change initial values but also values after a certain time. I.e. the conditi…
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I noted two things about this function:
1) If PEtab add initial condition parameters, these are added here (probably related to https://github.com/sebapersson/PEtab.jl/issues/155). This probably sh…
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There are a multitude of Issues currently opened regarding ensembles (see for example and further context #1357, #1349, #1296, #1294, #1291). We should use this to have a general discussion on the pur…