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yaml2sbml-dev
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yaml2sbml
Tool to convert an ODE model specified in the YAML format to SBML.
https://yaml2sbml.readthedocs.io/en/latest/
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Initial assignment feature
#145
aidinbii
opened
8 months ago
1
PEtab 2
#144
dilpath
opened
1 year ago
0
Remove ODE requirement
#143
dilpath
opened
1 year ago
0
Make ODE specification optional
#142
shoepfl
opened
1 year ago
2
Update of outdated links in "Input Format for yaml2sbml"
#141
C-Peiter
closed
1 year ago
1
initial fix of linter
#140
jvanhoefer
opened
2 years ago
1
Add CI as cron job on GitHub Actions
#139
yannikschaelte
opened
2 years ago
1
Error in creation of PEtab tables for the model
#138
aidinbii
opened
2 years ago
10
Prepare v025
#137
jvanhoefer
closed
3 years ago
0
Fix remove unit assignments
#136
jvanhoefer
closed
3 years ago
2
Avoid unit consistency checks
#135
dilpath
closed
3 years ago
5
Prepare v024 (#133)
#134
jvanhoefer
closed
3 years ago
0
Prepare v024
#133
jvanhoefer
closed
3 years ago
1
Zenodo badge
#132
jvanhoefer
closed
3 years ago
0
Version 0.2.3
#131
jvanhoefer
closed
3 years ago
1
Prepare v023
#130
jvanhoefer
closed
3 years ago
0
Adress reviewer comments to the text
#129
jvanhoefer
closed
3 years ago
1
Adress comments regarding the software in the JOSS reviewing process
#128
jvanhoefer
closed
3 years ago
1
Reviewer 2 comments for JOSS submission
#127
marouenbg
closed
3 years ago
3
JOSS review
#126
jvanhoefer
closed
3 years ago
0
Reviewer comments for JOSS submisson
#125
AoifeHughes
closed
3 years ago
4
Events in yaml2sbml
#124
jvanhoefer
opened
3 years ago
0
Fix tests
#123
jvanhoefer
closed
3 years ago
3
Version 0.2.2
#122
jvanhoefer
closed
3 years ago
3
Prepare v022
#121
jvanhoefer
closed
3 years ago
1
Fix pydocstyle was not called; update swig
#120
yannikschaelte
closed
3 years ago
1
[WIP]
#119
yannikschaelte
closed
3 years ago
1
Feature check sbml success
#118
jvanhoefer
closed
3 years ago
2
fix notebooks fixes #114
#117
jvanhoefer
closed
3 years ago
1
Add logo license; fixes #108
#116
yannikschaelte
closed
3 years ago
1
Add MacOS+Windows tests; clean up .gitignore
#115
yannikschaelte
closed
3 years ago
1
Format validation broken in Lotka Volterra jupyter notebook
#114
jvanhoefer
closed
3 years ago
1
Unfix AMICI version
#113
dilpath
closed
3 years ago
3
add missing release notes (#111)
#112
jvanhoefer
closed
3 years ago
0
add missing release notes
#111
jvanhoefer
closed
3 years ago
0
New release
#110
jvanhoefer
closed
3 years ago
0
fix #99 fix #107
#109
jvanhoefer
closed
3 years ago
2
Add logo license
#108
yannikschaelte
closed
3 years ago
0
Issues when state variable begins with a number
#107
NicholasCowie
closed
3 years ago
3
Use petablinter in example notebooks to demonstrate that the output is valid PEtab
#106
yannikschaelte
closed
3 years ago
3
fixes 98, fixes 101
#105
jvanhoefer
closed
3 years ago
1
Add documentation badge to README and readthedocs
#104
martamatos
closed
3 years ago
1
Fix readme link to format specification
#103
martamatos
closed
3 years ago
1
Logo not rendering on README
#102
martamatos
closed
3 years ago
4
Definition of Model ID for use with pyPESTO and AMICI
#101
elbaraim
closed
3 years ago
3
Ensure data types in Model Editor
#100
jvanhoefer
closed
3 years ago
3
validation error for formulas starting with minus
#99
jvanhoefer
closed
3 years ago
2
option to have observables as assignments in yaml2sbml call
#98
jvanhoefer
closed
3 years ago
1
Feature v 021
#97
jvanhoefer
closed
3 years ago
2
Update issue templates
#96
jvanhoefer
closed
3 years ago
2
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