-
Hello, I was trying to work with the code uploaded and for some reason I get this error when I run summarizeMolecularProfiles
**Error in (function (classes, fdef, mtable) : unable to find an inher…
-
As the **data team**, I want **to handle pharmacogenetic evidence involving drug combinations where currently no drugId is mapped** because **this will ensure a more accurate representation of all pha…
-
When ingesting PharmGKB data, EVA team uses OLS to map drug labels to ChEBI molecule ontology. They have been using OLS to map disease labels to EFO before, so the applicable drug ontology makes sense…
-
Hi @krchristie @zoependlington @paolaroncaglia
I think, given the timing it would be best if we could both approach the 'response to' terms in a systematic way rather than as part of sporadic tick…
-
For the 23.12 release, we need to work on the public documentation to make sure we cover:
- [x] the target prioritisation view (including insight on scoring algorithm and changes with the Mouse Mod…
-
We would like to use Pharmacogenetics to inform target prioritisation and visualise the data onto out target prioritisation page (full scoping on the right attribute still needs to be covered).
In …
-
We identified a systemic bug in the PharmGKB data as handled by EVA, where the
`phenotypeFromSourceId`: `null` ("description": "EFO ID of phenotype, mapped through ZOOMA / OXO)
This bug transla…
-
Ticket outlining the _backend_ work required for the [Pharmacogenomics widget](https://github.com/opentargets/issues/issues/3113).
## Background
See ticket for widget above.
[Schema](https://gi…
-
I would like to reopen issue #128
I work with 30× WGS data. I am uploading a test vcf file with the positions of one NUDT15 gene and the final report in HTML format. 4 items are missing or not valida…
-
We want to integrate Pharmacogenomics data into the Platform, with the aim to inform our users about those variants that have an impact in the response of a drug. This will enable a more personalized …