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La función filter_hmmer en lugar de filtrar crea filas con todos los valores inicializados a NA.
Replicar:
```r
uniprot.url
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Hi hmmer team!
I am reaching out to ask if there are any plans to make hmmer compatible on the new Apple M1 chips? I've tried installing the package on my new machine with homebrew and from source …
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Añadir una función que filtre los resultados en base al Evalue. Hay tres tipos de Evalue:
1. El Evalue de las secuencias -> hits.evalue
2. El Evalue del dominio de cada secuencia condicionado a que …
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Hi,
I used `download_eggnog_data.py` to download the insect hmmer search file.(`python download_eggnog_data.py -H -d 2759 -y --data_dir /home/data/eggnog/annotation/hmmer/50557` )
I then got a folde…
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Hi Rengang,
I have got the following error, and it seems like my sequence is too long?
How to fix it, Split my genome or change the script?
STDOUT:
b…
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For some proteins the workflow interrupts at step seven (reduceseqset), because of an IsDirectoryError. But already in step five (runeasel) the key file could not be found. For example this is the cas…
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Hi,
I am trying to run HMMER on a pair of query/target FASTA files; both files were confirmed not to contain any other char but ACGT, both files are formatted as single-line FASTA files. The query fi…
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Dear HMMER team,
I'm wondering if it would be possible or practical to add an option to `phmmer`, which would stop the search after a specified number of significant hits `N` have been found. This …
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I'm trying to run nhmmer function but can't seem to get the alphabet right. Running
```python
import pyhmmer
seq1 = pyhmmer.easel.TextSequence(name=b"seq1", sequence="ACCGACA")
s…
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Hi all,
I got an error when running jackhmmer by using a compressed file as ``, which should be fine according to the user guide. However, it just didn't work and threw an error. I also tried a sma…