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Hello there,
I am using CAT to annotate contigs and the procedure stops at using prodigal. Here is the info of the log file
[2022-05-23 21:06:58] ERROR: Prodigal finished abnormally.
# CAT v5.2…
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Hi, I use Spades to assemble my metatranscriptome. I wonder whether prodigal can predict protein from assembled metatranscriptome?
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Can I use _Prodigal_ to **predict fungal genes**?
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apcamargo
Hi,
First of all, thank you for you excellent tools, i did some test on my virus metagenomic data by prodigal-gv and prodigal 2.6.3 in " p meta", and i finally get 2440739 proteins by pro…
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## Environment
- [ ] Installed via pip (include the output of `pip list`)
- [ √] Using a conda environment (include the output of `conda list && conda list --revisions`)
- [ ] Using a Docker contai…
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Prodigal penalizes predicting genes that are shorter than 250 bp (83 aa). As a result, Prokka is missing a number of short proteins that do exist in a closely related species. Any thoughts on how to d…
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Dear @oschwengers thanks very much for amazing annotation tool.
I wonder if the following is a bug or maybe we are using it wrong:
We tried annotating an E.coli assembly with the following command…
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hello, something strange happens.
when I use prokka, which uses prodigal to predict CDS,(prokka version 1.14.6) to annotate, the result showed that the position from 49243 to 50055 is entire CDS. but…
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* pharokka version: 1.7.2
* Python version: 3.10.14
* Operating System: Ubuntu 20.04.3.LTS / Intel® Core™ i9-10980XE CPU @ 3.00GHz × 36 / 256 Gb RAM / NVIDIA Corporation GP108 [GeForce GT 1030]
#…
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Got this error when trying to install prodigal
```
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/mortonjt/Documents/micronota/m…