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**Please describe your question, idea, or concern.**
Dear GO team,
I have a question about the 'Date' field in GAF files. While looking through human GAF files (goa_human.gaf downloaded from GO Da…
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Hi,
First, apologies if this is not the best place to ask this question. I'm doing gene annotation for a non-model rodent, and I have tried several approaches:
1. BRAKER2: with a large protein dat…
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Hi,
Thanks for providing this tool, I'm using it, and it is very fast and flexible in usage.
I wanted to ask you if you think would be possible to use it for functional annotation and quantificat…
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- The issue is related to the user-provided proteins feature and its associated issues.
- I am trying to use bakta to perform annotation on a phage predicted protein file that used Phanotate. I wa…
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Hi, thank you for your supports before. I used for my viral protein, but from the "_predictions.csv" only 3,021 protein was annotation (all 109,221 viral protein), and for this 3,021 result 60% is "un…
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Hi everybody,
I am doing a functional metagenomic study. I did the annotation of protein sequences using HMMER against the Resfam database.
The question is how can I know that one of the predict…
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Hello,
I am working on TBI in killifish using bioinformatics approach.
I want to investigate killifish clusters and it’s subclusters as it is not very well studied. I want to discover the cell typ…
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Hi, I'm looking to predict genes for my insect genome. For most genes the prediction is working out good, but egapx is missing predictions for some species specific, single exon genes (experiementally…
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Hi, currently the formatting of SPARQL queries aligns predicates/objects based on the length of the subject, e.g.:
```sparql
PREFIX rdfs:
PREFIX skos:
PREFIX up:
SELECT DISTINCT ?diseaseLa…
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We want to be able to include some standard basic statistics on the gene/protein annotation set for an assembly in a genome note. This sub workflow should accept an annotation set and calculate some s…