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Thank you for developing Chroma. Chroma is such an excellent generative AI tool for de novo protein design.
I would like to inquire about how one can use Chroma to design new functional proteins (no…
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### Description of the bug
The errors are reported when i ran PXD001819 LFQ datasets (about 10G mzML files). It looks like it's running out of memory? But the available memory is 120G. So I'm not …
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Hi team,
Thanks for a great resource. I've been struggling for a few days to troubleshoot this issue. I'm getting a very cryptic index error when trying to run the redesign Chain A in this notebook…
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Hi @lsilvam:
Could you make a design draft of the report we intent to create to describe the protein quantification? Something drawn with pen and paper would suffice.
We can then work on a Quart…
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## Correction here
### **C-terminus** was truncated, not. central domain. check Joe's reply in https://github.com/opensourceantibiotics/murligase/issues/36 but does not influence the logic of the ide…
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I was super curious to try this out on my favorite discrete data: protein sequences! I created a simple dataset class following the existing code:
https://github.com/dacarlin/protein-sedd/blob/mai…
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Hello,
I am using DIA-NN to process multiplexed samples using dimethyl labeling. I would like to request a feature where your program can be used to derive the protein intensities for each of the c…
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Hi, I love your work and the possibilities that offer being superfast. I was wondering if is it possible in binder design to only design specific residues of the binder knowing the structure of the ot…
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Hi, RF diffusion team,
I am inpainting a protein with varied AA length.
For a fixed length of design, I can use --fixed_positions_jsonl function in ProteinMPNN.
For a varied length of designs, t…
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### 🚀 The feature, motivation and pitch
- Paper: XENet: Using a new graph convolution to accelerate the timeline for protein design on quantum computers
- This paper introduces XENet, a new graph…