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Just found some curies which might be invalid curies in KG2.5.2. Most of them are isolated curies but some of them are clustered with other curies in KG2.5.2C and has links with other curies.
Here …
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Dear Vadim,
I would have some questions about the Quantity.Quality.
In a previous discussion (https://github.com/vdemichev/DiaNN/discussions/764), you explained this parameter can filter the precu…
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@LiNiMGI recently noticed that all of the mouse proteoform annotations are missing from GOC resources. In the GOC mouse gaf release (http://current.geneontology.org/products/pages/downloads.html) they…
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### Discussed in https://github.com/GMOD/jbrowse-components/discussions/4598
Originally posted by **Thys3Potgieter** October 10, 2024
Dear community
I am trying to visualize blastn results …
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Looking at the Parameters.html file:
- `Param$PathToProteinList` is not really clear. Is it a list of proteoforms or accessions that will be flagged throughout the pipeline? Or is it something else? …
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Hello;
I'm currently running topmg using a model protein that's heavily modified (around 2-5 phosphorylations) and the protein's quite large (around 40kDa) so the precursor scans were acquired at l…
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When I am using the FDR calculator to process my data, I keep getting "Unhandled Exception: System.ArgumentException: count must be greater than 0".
My application is quite specific, my LCMS data i…
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This issue is a follow-up to https://github.com/lgatto/MSnbase/issues/167.
@adder asked for user-defined locations of the Modification:
> You also have to be able to specify where the variable m…
sgibb updated
7 years ago
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There is an email trail among Huaiyu, Peter and David discussing about this. Here is a summary.
In the Reactome reaction ([R-HSA-1980118](https://reactome.org/PathwayBrowser/#/R-HSA-1980143&SEL=R-H…
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Thank for you sharing this standard dataset for protein inference. I have the associated publication "The,M. et al. (2018) A Protein Standard That Emulates Homology for the Characterization of Protein…