-
We should have a prototype of an SDRF definition for metabolomics data. EPMA will work with SDRF for the standard metadata for samples for proteomics and metabolomics, and in principle, the file forma…
-
Hi,
I'm trying out AlphaDIA for the first time and I encountered this error message (see below). My files are from QExactive ran in staggered windows DIA acquisition. I'm wondering if the staggered…
-
Hi Alex
Is there a reason why the model was not fitted with npx_normalised data?
many thanks
prasad
-
When using the OBI lookup service for terms relevant to targeted/untargeted metabolomics and proteomics assays used in MoTrPAC data, I wasn't able to find the terms for the following:
```
Targeted 3…
-
See: https://dagit-napa.microbiomedata.org/runs/c3b9b292-7fc4-403d-a0bd-d628f61438a1?focusedTime=1705439489991&logFileKey=suimkuwe
changesheets:submit endpoint works but json:submit endpoint does not…
aclum updated
5 months ago
-
Hi,
I am trying MOFA for integrating Proteomics and RNA-seq dataset. I run the following codes.
```
`dd_WO_batch
-
We have two technology types for metabolomics:
- **LC-MS-based metabolomics**: @mmattano used (https://github.com/bigbio/proteomics-sample-metadata/pull/680) in the PR the EDAM ontology `NT=LC-MS-…
-
#### Tasks
- [ ] Determine what the database queries were that people ran manually in order to provide metrics data to the leadership team for a recent report. At least some of the data pertained t…
-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
-Note: The package is currently stored on the Lab github but I do the maintenance and…
-
This issue is to provide a shared space (a bit more structure than slack) for all the members of the community working on tidy adapters/analysis frameworks for proteomics/metabolomics/mass spectroscop…