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It would be really helpful to create a catalog of all the Roberts Lab projects so we can:
1) keep track of what's being done or already been done
and
2) do meta-analyses on specific datasets
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It would be nice to have links to the most relevant repositories and resources related to `sdrf-pipelines` in the `README.md`. e.g. to the https://github.com/bigbio/proteomics-metadata-standard repo.
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Datasets for gene feature boundaries, or ncRNA
Data type/ details | method | PMID | First/last author | data source | status | Comment
-- | -- | -- | -- | -- | -- | --
intron/spliceosom…
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I installed all the tools on a clean galaxy instance based on all the workflows (`workflow-to-tools` + `shed-tools install`) + installed all the workflows itself and went trough all them manually, rev…
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Future Use cases:
- [ ] Fin the database or repository that fits my need. For example, I have a dataset and I want to know
is the best option for my needs. For example which of the ProteomeXchan…
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This is a tracking issue for some of the current issues when having a SpatialImage of circa >10 channels in SpatialData:
- [ ] **Vizarr, Avivator, Vitessce fail when loading SpatialImage**
- T…
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Hello,
I have a question about measuring the concordance between bulk and sc DE tables. In your script, you used 6 different methods to generate DE tables when the input is bulk RNA-seq data. Whic…
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When using the OBI lookup service for terms relevant to targeted/untargeted metabolomics and proteomics assays used in MoTrPAC data, I wasn't able to find the terms for the following:
```
Targeted 3…
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# Abstract
Proteomics is a broad research field embracing a wide range of alternative experimental and computational approaches. This led to the development of a zoo of single- and multi-purpos…