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technology type is mandatory in SDRF but no section in the SDRF mentions it, and even when it is added to the templates, we have confusion about where should be. The validator says after the assay nam…
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It would be really helpful to create a catalog of all the Roberts Lab projects so we can:
1) keep track of what's being done or already been done
and
2) do meta-analyses on specific datasets
…
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# Design (@brianraymor)
## obs
...
### modality
Key
modality
Annotator
Curator MUST annotate.
Value
categorical wit…
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@ypriverol Do you have a set of SDRF files for experiments of all different kinds of expected flavors?
If not we should systematically generate SDRF example files with all the different labelling t…
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@pkay47
Step 1 - Can you find out if data (Glycosylation, phosphorylation) from PRIDE or similar mass spec databases makes it into UniProt and is later shared with GlyGen? Can you look into it and p…
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# Abstract
Proteomics is a broad research field embracing a wide range of alternative experimental and computational approaches. This led to the development of a zoo of single- and multi-purpos…
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This is a tracking issue for some of the current issues when having a SpatialImage of circa >10 channels in SpatialData:
- [ ] **Vizarr, Avivator, Vitessce fail when loading SpatialImage**
- T…
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ND4BB data = @mkoatwork and @agiani99
ReSOLUTE = @ulo and @danidi Proteomics data acquired, tbd at next consortium meeting in 2 weeks, then 30 days timeline (total 6 weeks) -> should be early July
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The current "dev" version of the workflow fails for me on the self-test data. The log output is included below (as part of "pipeline_report.txt") , but the cause of the problem isn't apparent from it.…
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I install MaxcotPercolator following https://www.sanger.ac.uk/science/tools/mascotpercolator. I try to run MascotPercolator on my Linux computer. However, it cannot work well and warn `No modifiaction…