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Hi @suqingdong,
Thank you for this fantastic package, I'm finding it super useful for my research. I'm going through some newly released abstracts and am hitting an error:
```
ParserError: Unknown …
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There is a database of retracted papers at:
It would be good to have a bot which periodically fetches updates, and then updates article metadata in fatcat appropriately.
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## Problem / Motivation
- WHO; Production
- WHEN: When all other updates are made
- WHERE: In the XML
- WHAT: change @pub-type to @date-type in the XML ```pub-date pub-type="collection">``` to ```…
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If we want to mine the literature we want to avoid working with the XML raw data and get
- Pubmed abstracts text
- Pubmed open full text articles
in a way that we can rapidly start prototyping models…
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I created a set of affiliation strings from Pubmed abstracts which all include 'Harvard' (University, medical school, etc) and ran them through match_affil, After downloading the most recent grid.csv…
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The default Lens converter is unable to extract figures from the following document:
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&id=4443854
due to the fact that the figures are o…
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This is a copy of https://github.com/owlcs/owlapi/issues/415; I think the issue may be better resolved here and then merged into owlapi.
For some ontologies in OBO format, xref clauses in the OBO fil…
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python
import sys; print(sys.version)
import platform; print(platform.python_imp…
sehjk updated
5 years ago
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hgnc contains gene group info:
https://www.genenames.org/data/genegroup/#!/group/567
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Hi, I was wondering if there was any way to parse the NCBI Sequin tbl format? It is defined here: https://www.ncbi.nlm.nih.gov/projects/Sequin/table.html
I don't _think_ I see any parser for it bu…