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Cool job.
The quantification method mentioned in the article has good generality. Is there any possibility to directly support any torch model, without such a complex usage method.
The ideal method…
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@nbasyl Sorry, When i use the follwing scripts, the quantification time is over ten days:
```
MODEL_ADDR=huggyllama/llama-7b
HF_ENDPOINT=https://hf-mirror.com export CUDA_VISIBLE_DEVICES=0,1,2,3
…
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Hi,
I have 3 ADAT files generated from DRAGEN DRAGEN_Protein_Quantification. I want to analyze these ADAT files together, how can I merge multiple ADAT files?
Thanks,
Junyan
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Hello,
Thanks for the great package. I have a phosphopeptide enrichment dataset. I am wondering how I can convert the diann_output.tsv to a table of phosphosites and their associated intensities.
…
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Hi, I ran this command to perform Isoquant quantification with the aim of obtaining transcript quantification results for all samples: isoquant.py --reference genome.fa --genedb ./merge.combined.gtf -…
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After quantification I tried simulating
IDs in expression profile:
NM_001001130.3
IDs in reference:
\>NM_001001130.3 Mus musculus zinc finger protein 85 (Zfp85), mRNA
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### Description of feature
Dear Developers,
Can you please point me to the documentation that describes how to run the Genome Quantification using the pipeline,
Best,
Nico
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I am using the FragPipe software for database searches, and the output file combined_ion.tsv is used for quantification with directLFQ. I plan to perform differential expression analysis using DEqMS, …
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for this case ：
```
(declare-fun arr () (Array Int Int))
(assert (forall ((x Int)) (=> (and (>= x 0) (< x 100)) (>= (select arr x) 0))))
(check-sat)
cvc5 test.smt2
unknown
z3 test.smt2
sa…
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Hi,
Thank you for the tool and insightful ideas!
I ran LocusMasterTE on my dataset, combining long-read and short-read quantification for TEs. However, I noticed that for some TEs supported by u…