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We know that a number of our recombination nodes are erroneous, and a number are probably correct. In particular, the ones that are designated by an `Xyy` Pango designation are likely correct.
We s…
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Hello, I am having a lot of trouble finding the right recombination map. How do I generate the second column ( Locus ID) since most maps only give me genetic and physical position?
Also what shoul…
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This is part of trying to keep track of outstanding problems before they come back to bite us, as discussed in the last telecon.
Currently dielectronic recombination is turned off in dev. This is be…
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I believe recombination events can be detected by sliding a window down a genome (or contig) to find the most similar known genomes for each window. Discontinuities in this list of top hits and their …
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V10 is now out and there are a host of new features that need to be supported. See [the announcement and associated paper in Solar News](https://solarnews.nso.edu/version-10-of-the-chianti-database-re…
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Hi,
I noticed the file in test folder `chr20.b37.gmap.gz` is the same as that supplied by [beagle](http://bochet.gcc.biostat.washington.edu/beagle/genetic_maps/). But this is different than what you…
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In the paper, the original formula is as follows:
![Screenshot 2024-04-05 at 15 58 23](https://github.com/AlphaGenes/AlphaPeel/assets/138952740/2ff76f3b-a5bd-4206-b478-402fb9fa81db)
r : recombiniati…
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Hello,
I have the data from gubbins gff file with coordinated (Start and Stop, and snp_count), I've downloaded this data and had the graph with peaks at the bottom. Could you please explain what is…
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Hi Paula,
Thanks a lot for the detailed README instructing the user how to run your code - and I really like the intuitive way of using the CLI!
#### Procedure
I tried to run the recombination …