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hapbin
Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)
GNU General Public License v3.0
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Finding a recombination map
#68
aramesh97
opened
1 year ago
4
WARNING: Map file has more loci than hap file!
#67
meimingWu
opened
2 years ago
1
iHS Results Interpretation
#66
YingLi13
closed
2 years ago
1
output flie contained nothing
#65
Morriyaty
opened
3 years ago
3
Illegal instruction (core dumped)
#64
rodrigopsav
opened
3 years ago
2
map file format requires genetic distance but I only have physical distance
#63
Yasirnawaz89
opened
3 years ago
1
xpehh p value calculation
#62
devenderarora
opened
4 years ago
2
Incorrectly documented output of ehhbin
#61
rwaples
opened
4 years ago
0
non standardised versus standardised
#60
paolo002
closed
4 years ago
2
Bugfix ihs freqs
#59
lauterbur
opened
4 years ago
0
Freq equal 0 to all SNPs
#58
dexcardos
closed
4 years ago
6
Allele frequency versus core haplotype frequency
#57
paolo002
opened
5 years ago
1
How to get a map file
#56
SC-Duan
closed
5 years ago
4
Hapbin standardised iHS values sign issue
#55
paolo002
closed
5 years ago
2
Compile from source error - Mojave
#54
apurvazaveri
opened
5 years ago
3
Fixed frequency output
#53
camaclean
closed
4 years ago
0
Potential bug in iHS calculation for hapbin1.3
#52
paolo002
closed
5 years ago
20
Discrepancy between hapbin v 1.0 and v1.3
#51
paolo002
closed
5 years ago
3
Add the zero-indexed SNP Index to IHS and XPEHH output.
#50
camaclean
closed
5 years ago
3
Hapbin Physical Map Info
#49
paolo002
closed
5 years ago
7
Fix XPEHH standardization in non-MPI version, add allele frequency to output
#48
camaclean
closed
5 years ago
2
Add standardization for XPEHH
#47
camaclean
closed
5 years ago
3
XPEHH output
#46
paolo002
closed
5 years ago
10
Added VCFtools example command
#45
lettools
closed
6 years ago
0
Limit the number of threads
#44
rwaples
closed
6 years ago
2
No default MAF cutoff for EHH calculations, only IHS/XPEHH.
#43
camaclean
opened
6 years ago
0
EHH not calculated
#42
shreyashruti
opened
6 years ago
4
Added python script to make .map files from 1000 Genomes files
#41
camaclean
closed
6 years ago
0
ERROR: Map file must have the same number of loci as hap file! Map file has 0 SNPs
#40
shreyashruti
opened
6 years ago
4
Is the locus ID same as that of rsID?
#39
shreyashruti
closed
6 years ago
4
Merging pairwise iHS/EHH features
#38
camaclean
closed
6 years ago
0
Request: Alternative denominator for XP-EHH
#37
stephenrong
closed
7 years ago
0
Fixed non-MPI build
#36
camaclean
closed
7 years ago
0
Fixed segfault
#35
camaclean
closed
7 years ago
0
Fix XP-EHH
#34
camaclean
closed
7 years ago
1
Potential bug in hapbin ihsbin
#33
hardingnj
opened
7 years ago
5
Fixed non-MPI version
#32
camaclean
closed
8 years ago
0
Fix xpehh output
#31
camaclean
closed
8 years ago
0
unrecognized command line option "-std=c++11" error when installing
#30
pyramidsnail
closed
8 years ago
0
Request: missing data handling
#29
magicDGS
opened
8 years ago
3
New release?
#28
hardingnj
closed
8 years ago
2
Provide un normalized XPEHH
#27
hardingnj
opened
8 years ago
5
Added max-extend support
#26
camaclean
closed
8 years ago
0
Added iHH output. Merged std and unstd output files.
#25
camaclean
closed
8 years ago
0
Fixed binning
#24
camaclean
closed
8 years ago
0
Fixed binning and recording of "0.0" bin loci.
#23
camaclean
closed
8 years ago
0
Comparing hapbin to selscan, hapbin does not seem to print rows when the derived allele frequency is < 0.5
#22
stephenrong
opened
8 years ago
7
For computing iHS and XPEHH, is there a way to set a maximum distance for the EHH decay curve, like selscan's --max-extend parameter?
#21
stephenrong
closed
7 years ago
2
Print iHH0, iHH1, iHHA, and iHHB
#20
stephenrong
closed
8 years ago
1
Added version information
#19
camaclean
closed
8 years ago
0
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