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It's confusing, but I think matrix data is read / written transposed from native hdf5 format
```
> create(fl system2("h5ls", fl)
col_attrs Group
layers Group
mat…
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NetCDF4 files are based on a subset of the HDF5 specs (learnt/relearnt this a few minutes ago). NetCDF4 files are just HDF5 files and can be read as such. Thus we can use the functions from 'rhdf5' to…
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I think I still encounter an issue that is similar to issue#32
i.e., I did not get the psites_number table in the hdf5 file.
```
group name otype dclass dim
0 / p_si…
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Two good examples are
KEA:
https://gist.github.com/mdsumner/a65ce8d42edfda5e649c7c4f858303b3#file-kea_rhdf5-r-L6
L3BIN format
https::/github.com/mdsumner/roc
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Currently column-wise slicing happens after each block of rows are loaded into memory. Fix this once rHDF5 has been updated to support column slicing via the hdf5 C++ api.
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Hi shmooTL devs,
I'm trying to follow the installation guide (through RStudio, R version 4.1) and running into an issue with this line:
`source('https://bioconductor.org/biocLite.R')`
I'm getti…
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```
> z = PaulHSCData(legacy=FALSE)
The value -2^31 was detected in the dataset.
This has been converted to NA within R.
The value -2^31 was detected in the dataset.
This has been converted to NA…
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Whenever I try installing this library in "R": install.packages("HuobinTan/scVAT") or install.packages("https://github.com/HuobinTan/scVAT.git")
I get this message:
**ERROR: dependencies 'rhdf5'…
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Hello,
I am having the same problem:
so
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This is likely an off-topic, but probably it's still helpful for someone to have it documented.
I created with `HDF5.jl` a file, using the default compression (blosc) at level 3. However, I was unabl…