-
```
uqbwoodc@curtin:20160131:/srv/projects/abisko/shotgun_abundance/103_contig_tree_relative_abundances/1_test$ ~/git/graftM/bin/graftM create --output 2.16.ribosomal_protein_S5.autotax.gpkg --sequenc…
wwood updated
4 years ago
-
should be a&b
SJAG_02340 | rps27 | 40S ribosomal protein S27 (predicted)
-> rps27a
SJAG_04998 | | ribosomal protein S27, zinc-binding domain superfamily (S27-like)
-> 40S ribosomal protein…
-
Dear Dr. Bickhart,
Hope this message finds you well. I have been working with the Snakemake workflow (magphase_workflow/MAGPhase) and encountered a couple of issues that I'd like to bring to your a…
-
Here is a FASTA file that will hang the code:
X>HQ604824.1 Amanita gemmata isolate BD 34 voucher UBC:F19764 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal R…
-
I do not entirely understand what is happening, but in some cases CDSs with ribosomal slippage from NCBI cause `double free or corruption (!prev)`:
```
$ gffread --version
0.12.7
$ curl https://…
-
Hi team,
I am trying to replicate the HPRC year1v2 PGGB steps stated here : https://github.com/pangenome/HPRCyear1v2genbank
I am using all of HPRC assemblies, 20 haplotypes from my data and CHM…
-
Hi,
I am interested in using long and short reads to assemble a transcriptome with RNA-Bloom2.
I had a few questions regarding pre-processing of reads before using RNA-Bloom2.
I am loosely fo…
-
Hello,
I encountered a problematic behaviour when running `ddqc`: the estimated ribosomal gene expression percentages are always very low and very different from `scanpy` estimation.
I found it c…
-
I think the 16SMicrobial database moved. This command doesn't work
# Download the 16 microbial database.
update_blastdb.pl 16SMicrobial --decompress
-
Hi,
I was trying to build a kraken2_nt database. Firstly I tried `kraken2-build --download-library nt --db $DBNAME`, however I was not able to download the database. The error message is:
```
D…