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@maxieds Although gtfold will build on my office machine it does not run:
```
math11024:bin heitsch$ ./gtmfe test.txt
GTfold: A Scalable Multicore Code for RNA Secondary Structure Prediction
(c) …
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Hello Developers,
I’m trying to use `mxfold2` to predict for some RNA sequences. However, I encountered a inconsistent result between my local prediction and the web service at `http://www.dna.bi…
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request from @bebatut
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The Biers structure sanitization function should be updated to match the OpenKnotScore sanitize_structure implementation. This will be made consistent across projects.
rhiju updated
2 months ago
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1. As a next step for this project, Marc should try to retrain the MXfold2 PyTorch models to see if the retrained model can reproduce the performance using the same neural network architecture and par…
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Hi,
I'm reaching out with a question related to the applicability of your models for tasks with a smaller dataset. Specifically, I'm interested in whether there are available scripts for fine-tuning…
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Hi all!
I am trying to combine the files below:
1. `masked.A.gff` from **directly runing AUGUSTUS with genome file** and converting by `augustus_GFF3_to_EVM_GFF3.pl`;
2. `augustus.hints.B.gtf` fr…
wu116 updated
11 months ago
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Hi,
Would you kindly add the tutorial and examples to this repository? I've tried going to:
- http://www.bioinf.uni-leipzig.de/Software/gADP/tutorial.html
but this appears empty.
I would lik…
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Introduction
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DeepChem's support for protein-based deep learning is still pretty early-stage. In this issue I propose a framework for adding support to DeepChem for doing more systemat…