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To expand the MC2 data model, data type-specific metadata models should be assembled and reviewed by the community via the Request for Comments process. One strategy for implementing is as follows:
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It seems that would be a powerful tool for the scRNA-seq data.
One of main concern is that acquiring reliable variants set for scRNA seq is challenge due to the high false positive and the limited se…
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**User story**
As a user of the scRNA Core pipeline, I would like bed verification support for the transfer between the cDNA PCR plate and the cDNA PCR XP plate.
Notes:
- The plate purposes and …
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Hello,
Thank you for developing this nice tool.
I'm interested in analyzing allele-specific expression (ASE) in my single-cell RNA-sequencing (scRNA-seq) data. This data comes from offspring tissues…
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### Description of feature
@mribeirodantas. Do you know if the scrna-seq pipeline on nf-core has testing data? I am thinking of creating a toy dataset to test over GitAction.
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- [ ] scRNA-seq
- https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/tutorial_mr#runmkref
- [ ] What about scATAC-seq
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The answer here could simply be 'no' 😄 but as this question came up recently for me, and it is one I've seen mentioned on the `nf-core/scrna` slack, I figured I'd raise it here to get your thoughts. …
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Hello,
My collegues and I are using your package in our scRNA-seq Seurat pipelines.
We were wondering if you could make one tagged Github release so your package could be more compatible with othe…
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Hello,
I've been using your software to much effect for scRNA for sometime now, and was hoping to bridge into scATAC. However, I'm running into an issue with the beta binomial estimation step. Namely…
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Hello,
Thanks for this resource.
I have a scRNA-seq dataset with close to 10,000 cells from droplet based sequencing (10x chromium).
How does the pipeline handle large number of cells from drop…