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## Description
When `tissue_positions.csv` rather than `tissue_positions_list.csv` is in the spatial directory for a Visium dataset, the resulting AnnData object has:
- NaN in adata.obs array_row, a…
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Sparse array could be both computational and space-efficient when storing mask images. I wonder if it's possible to support sparse array in NGFF spec.
Just for reference scverse/spatialdata#691
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Hello, thank you for developing such a good tool.
When I followed [this tutorial](https://spatialdata.scverse.org/en/latest/tutorials/notebooks/notebooks/examples/transformations.html), I have erro…
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In https://github.com/scverse/napari-spatialdata/blob/main/tests/test_spatialdata.py there are the tests
- `test_sdatawidget_images()`
- `test_sdatawidget_labels()`
- `test_sdatawidget_points()`
…
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https://github.com/scverse/spatialdata-io/blame/bc17abc065c39e07d6b17affaf2c4b95adbaafea/src/spatialdata_io/readers/visium_hd.py#L357
Currently `visium_hd` function can't handle empty file prefixes…
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https://github.com/scverse/spatialdata-plot/blob/88f692848e06907fe86a8ac3bc0f689b1a114479/src/spatialdata_plot/pl/basic.py#L139
spatialdata-plot has the goal to support different plotting backends.…
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See https://github.com/scverse/scverse-tutorials/blob/main/.github/workflows/execute-nbs.yaml
This fixes:
- #28
- #36
- #45
- #66
- #74
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Hi, I get an error when trying to read in a Visium HD dataset with the visium_hd reader of v0.1.5. The same code works perfectly fine with v0.1.4.
```
from spatialdata_io import visium_hd
sdata …
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### Please describe your wishes and possible alternatives to achieve the desired result.
After https://github.com/scverse/anndata/pull/1480 was partially completed by https://github.com/scverse/annd…
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### Description of feature
Store repeated measurements of the same variables