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Hello,
I'm currently annotating the SDRF for [this project](https://www.nature.com/articles/s41597-020-00724-7) ([PXD020785](https://www.ebi.ac.uk/pride/archive/projects/PXD020785)). I'm wondering…
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For both SDRF and OpenMS experimental design
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```
#!python
[INFO, L:57] -process experiment E-GEOD-26688-
[INFO, L:138] get experiment info from http://www.ebi.ac.uk/arrayexpress/json/v2/experiments/arrays.txt
[INFO, L:152] get experiment file i…
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> java.lang.RuntimeException: Cancelled, or couldn't fetch pub/databases/microarray/data/experiment/SMDB/E-SMDB-1853/E-SMDB-1853.sdrf.txt, make sure the file exists on the remote server and permission…
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```
#!python
[INFO, L:74] -process experiment E-GEOD-38516-
[INFO, L:155] get experiment info from http://www.ebi.ac.uk/arrayexpress/json/v2/experiments/arrays.txt
[INFO, L:169] get experiment file i…
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Variables with failed assignment in a try block are not available in the corresponding exception.
https://github.com/bigbio/sdrf-pipelines/blob/cf2425d5767cddfaaae1b31d0385eef51eff6171/sdrf_pipelin…
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Hi there,
Thank you for sharing the precious dataset.
I downloaded all the fastq files from the following link and applied Cellranger VDJ.
https://www.ebi.ac.uk/biostudies/arrayexpress/studies/…
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In train.py file, I guess there exists 3 main preprocessing methods.
However, the only one working mehtod is digl.
Are you willing to update the version of "sdrf" and "knn"?
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Hi!
Would it be possible to include a free text validation for SDRF? This would smooth out the link between lesSDRF and the PRIDE submission pipeline.
Always happy to help with this development :)
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```
#!python
[INFO, L:74] -process experiment E-GEOD-49355-
[INFO, L:155] get experiment info from http://www.ebi.ac.uk/arrayexpress/json/v2/experiments/arrays.txt
[INFO, L:169] get experiment file i…