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Hello, I am trying to generate the input for SIGNALS using hmmcopy and counthaps; we have single-end data and we have realized that our data doesn't work with your software, specifically for the count…
shngk updated
4 months ago
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Hello,
Is the WASP mapping pipeline suitable/recommended to be used on WGS data? I have followed some suggestions here to split some of the steps by chromosome since the files are large. However, f…
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Hello,
I'm analysing single-cell full-length RNA sequencing data. I would like to perform an analysis on alternative splicing exons, which has been mentioned multiple times in your research group's…
weib3 updated
1 month ago
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I used sequencing data to align with Bowtie2 to the GTDB database, and then I used the gtdb_to_taxdump.py and acc2gtdb_tax.py scripts to generate name, nodes, and acc2tax files. However, I encountered…
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In the `miairr/data_elements.rst`, we mention having six high-level categories: Study and subject, sample collection, sample processing and sequencing, raw sequences, processing of sequence data, and …
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Hello again!
I want to process the sequencing data obtained by Croce _et al_ in **"Phage display profiling of CDR3β loops enables machine learning predictions of NY-ESO-1 specific TCRs"** with TRUS…
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Hello!
I stumbled across your page while looking for others who have implemented a Banner data scraper that works with the "updated" design.
I maintain a [course scheduling web app](https://gith…
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**What topic do you wish to add?**
A domain overview page discussing general data management considerations regarding sequencing is currently missing.
Some of this is presently reported in "marine …
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Hi,
We have sequenced data (from Ion Torrent) for Low-pass shotgun sequencing. Is shotgun sequencing data compatibility to run ichorCNA to estimate the tumor fractionas as well as copy number identif…
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## Problem Statement
Data managers should have the ability to update and delete records from Metamist. Currently, there is limited ability to update records, and where there is, it's mostly confined …