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Hi there,
I've been using isoCirc successfully for a while now but this week after installing v1.0.6, it seems to be generating some errors towards the end of the process. I am able to get isocirc.…
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hi, shujun
Thank you for developing this tool !
I ran into some problems while running this test file, and here is the code I ran：
```
perl ../EDTA.pl --genome genome.fa --overwrite 1 --sensitive…
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I was able to run jtk successfully with the example reads, but I ran into an issue using my own nanopore reads.
Here is the tail of the output, running with `verbose = 2`
```
[2024-10-11T12:04…
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Hi
when I try to run lastz_32 ,but I meet the problem that it seems not work.
/root/data1/xuzhikang2021/try-lastz/bin/lastz_32 /root/data1/xuzhikang2021/try-lastz/try-cut/bmus.2bit[multiple] /ro…
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I've been working with the fasta files downloaded from here https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/.
What I've trying to do is to find repeat sequences across the different chromos…
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Hello,
I'm having this issue when trying to use a sequence template .csv file:
Warning message:
In read.table(file = file, header = header, sep = sep, quote = quote, :
incomplete final lin…
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Hi, I have a 62kb deletion that is very obviously heterzygous but sniffles is calling it as homozygous even the coverage field its's obvious its heterozygous..... anybody have an idea what to do, or i…
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Dear developers,
Thanks for your great tools! I have browsed the documentation of LASTZ and may miss the introduction of multiple threads use to accelerate aligning. Could you please tell me how to u…
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The attached hmm and target sequence (both with .txt extension to force github to allow them to be uploaded) pair to yield a >9Kb long gap in an alignment.
[target.fa.txt](https://github.com/EddyR…
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Line 439 in processRead.sh.
Rscript --vanilla ~/replong/linenum.R $file
Lines 390 and 461 get it right (I guess), as do ten other uses of R scripts.