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http://toolshed.g2.bx.psu.edu/repos/iuc/microsatbed/microsatbed/1.3.2+galaxy1
Ross @fubar2 suggests increasing to be the same as Deeptools since it also makes use of ucsc-bedgraphtobigwig.
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Hi
when I try to run lastz_32 ,but I meet the problem that it seems not work.
/root/data1/xuzhikang2021/try-lastz/bin/lastz_32 /root/data1/xuzhikang2021/try-lastz/try-cut/bmus.2bit[multiple] /ro…
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Hi there,
I've been using isoCirc successfully for a while now but this week after installing v1.0.6, it seems to be generating some errors towards the end of the process. I am able to get isocirc.…
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I've been working with the fasta files downloaded from here https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/.
What I've trying to do is to find repeat sequences across the different chromos…
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I am trying to build a lobSTR model for the non-PCR-free nano model. I have a BAM file generated by BWA-MEM. The program crashes as follows.
```
_______
\\ // / …
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Hello,
I'm having this issue when trying to use a sequence template .csv file:
Warning message:
In read.table(file = file, header = header, sep = sep, quote = quote, :
incomplete final lin…
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Dear developers,
Thanks for your great tools! I have browsed the documentation of LASTZ and may miss the introduction of multiple threads use to accelerate aligning. Could you please tell me how to u…
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hi, shujun
Thank you for developing this tool !
I ran into some problems while running this test file, and here is the code I ran:
```
perl ../EDTA.pl --genome genome.fa --overwrite 1 --sensitive…
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The attached hmm and target sequence (both with .txt extension to force github to allow them to be uploaded) pair to yield a >9Kb long gap in an alignment.
[target.fa.txt](https://github.com/EddyR…
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Line 439 in processRead.sh.
Rscript --vanilla ~/replong/linenum.R $file
Lines 390 and 461 get it right (I guess), as do ten other uses of R scripts.