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### Please describe your feature request:
The task is about investigating parallel execution of Integration/Functional Tests that are now executed sequentially leading to long waiting time.
As most …
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Hi all,
we were recently wandering what quality control to show for the performance of the deconvolution in a publication. I saw some people correlating the proportions of the reference single cell o…
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In many scenarios, I will fingerprint different targets, and then convert the fingerprint recognition results into tags for Nuclei to perform vulnerability detection.
When I need to send a large nu…
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I am wondering whether I can use single nuclei RNA-seq data as input. Compared with scRNA-seq, snRNA-seq tends to capture the mRNA inside the nuclei. I think this might introduce some potential biases…
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anyone who ran nuclei using this tool?
I'm getting the following error.
```
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____ __ _______/ /__ (_)
/ __ \/ / / / ___/ / _ \/ /
/ / / / /_/ /…
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Is your dataset not yet in sfaira?
No
Describe the data set
Fill in below:
Link to publication: https://www.nature.com/articles/s41593-021-01005-1
Title of publication: Disentangling glial di…
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Installed on a kali linux system and it started this and assumed it was because Kali, so i installed a fresh Ubuntu box and getting same results.
When running the first scan example, i dont really …
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Hi,
I was wondering if it is possible to include metrics like percentage reads mapped to intron and exon regions from the star solo output -- as the mapping metrics in 10x web summary. We found t…
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Hi, I’m just starting out in this field.
We have an scRNA-seq dataset that includes 438 million paired-end reads (2x150bp) from approximately 8000 cells sourced from tissue samples. We processed the …
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The SciKit-HEP guys also offer a nuclei table: https://github.com/scikit-hep/particle/blob/master/src/particle/data/nuclei2020.csv
We should add that.
The Python package `particle` combines ever…