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In closing [this PR](https://github.com/ComputationalRadiationPhysics/picongpu/pull/5082#issuecomment-2343515776), I had a look at the Snakemake workflows [here](https://github.com/ComputationalRadiat…
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Hi @johanneskoester et. al. I've really been enjoying the new dataclass approach to the Python API for snakemake. I've been successfully running some basic versions of my pipeline locally on my Mac,…
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Hello dear developers!
I'd like to use loco-pipe for my analyses, but can't install it properly (sorry I'm not very used to mamba). Here is the error message when trying to create the loco-pipe mam…
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I am using the latest version of Pypsa-earth installing the environment using mamba.
## Describe the Bug
When trying to solve the network I get the following error message:
```
INFO:pypsa.li…
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Hi, does it run with the latest Snakemake v.8 release, given the deprecated elements?
Also, are there other third party utils included besides CLI and the Gnomad (not already in the DESCRIPTION file)…
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**Snakemake version**
I have snakemake 8.20.6.
**Describe the bug**
When I run "snakemake BLPt0001/assembly/verkko/assembly.haplotype1.fasta --touch --cores 1" I get a PulpSolverError.
**L…
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I believe I have encountered an issue similar to https://github.com/snakemake/snakemake-github-action/issues/37.
Since the latest Snakemake update to v8.20.6, my github actions is failing with:
…
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Hi!
I am grying out this tool now. I installed via conda, and am using it on a slurm run cluster with srun. Have asked for 10 cpus. I have a file list containing 8 plasmid fasta seqs. The plasmids …
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Hi There,
The multismash is a welcome development. We installed this as a module and while testing it complaints about FileNotFoundError, as below. Is this related to snakemake standard schema yaml…
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hello,
first of all many thanks for the work and effort to pile this workflow.
I am attending to use the pipeline however I fail to find where I can indicate where my already downloaded nt datab…