issues
search
snakemake
/
snakemake-github-action
A Github action for running a Snakemake workflow
MIT License
51
stars
12
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Bug: conda is not properly installed with v8.0.1 (stable) docker build
#37
ezherman
closed
8 months ago
6
chore: trigger new release to pull in latest snakemake
#36
dlaehnemann
closed
1 year ago
1
fix: improve error handling logic
#35
johanneskoester
closed
1 year ago
0
chore: release 1.25.1
#34
github-actions[bot]
closed
1 year ago
1
fix: correctly fail when printing disk space
#33
FelixMoelder
closed
1 year ago
0
chore: release 1.25.0
#32
github-actions[bot]
closed
1 year ago
1
feat: option for printing disk space on error
#31
FelixMoelder
closed
1 year ago
0
Feature request: Option to make failure == success
#30
hepcat72
opened
1 year ago
0
How to detect if steps would hang
#29
hepcat72
opened
1 year ago
0
Is `--kubernetes` flag an option?
#28
jairav
closed
1 year ago
1
How to save output of list-untracked
#27
hepcat72
opened
1 year ago
0
Use snakemake conda envs with GitHub Actions/cache
#26
lczech
opened
1 year ago
2
Unable to find Snakefile
#25
pschloss
opened
1 year ago
1
How to update environment dependencies?
#24
matinnuhamunada
opened
2 years ago
0
configure strict priorities by executing conda config --set channel_priority strict
#23
seb-mueller
closed
2 years ago
2
Workflow defines configfile config/config.yml but it is not present or accessible.
#22
Ulthran
opened
2 years ago
4
possibility to set snakemake version
#21
Smeds
opened
2 years ago
0
chore: release 1.24.0
#20
github-actions[bot]
closed
2 years ago
1
chore: release automation
#19
johanneskoester
closed
2 years ago
0
Snakemake `--generate-unit-tests` system breaks relative paths
#18
G-kodes
opened
2 years ago
0
Containerize Fails with Conda Envs
#17
mfansler
closed
2 years ago
1
Fixes 'containerize' example
#16
mfansler
closed
2 years ago
0
Unable to find version `v1`
#15
mfansler
closed
2 years ago
1
feat: add containerize support
#14
thomasbtf
closed
3 years ago
0
update to v6.4.0
#13
dlaehnemann
closed
3 years ago
0
update README
#12
Adrian-Cantu
opened
3 years ago
0
update to snakemake 6.1.0
#11
dlaehnemann
closed
3 years ago
0
Update Dockerfile
#10
FelixMoelder
closed
3 years ago
0
Flag --use-singularity
#9
marrip
opened
3 years ago
7
Updated Snakemake version (5.29.0)
#8
HenningTimm
closed
3 years ago
2
Update to snakemake 5.27.3
#7
FelixMoelder
closed
3 years ago
0
Update dockerfile
#6
FelixMoelder
closed
3 years ago
0
update Docker container to newest snakemake
#5
dlaehnemann
closed
4 years ago
0
Update README.md
#4
EQt
closed
4 years ago
0
Save png of DAG using this action
#3
colinbrislawn
opened
4 years ago
1
Update example command on README.md to 1.4.1, closes #1
#2
colinbrislawn
closed
4 years ago
1
snakemake: command not found in v1.4.0
#1
sk-sahu
opened
4 years ago
1