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@percyfal looks like something has happened to the latest snakemake release. Currently the aMeta testrun fails with strange error, it was not the case two weeks ago:
```
(aMeta) nikolay@dell:~/WA…
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showyourwork version: 0.4.4.dev37+g1526059 (latest on main branch as of August 1)
snakemake version: 7.15.2
Python version: 3.9.19
Minimal reproducible example:
In one of my projects I changed…
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The current test suite is confusing due to inconsistent naming schemes and a lack of documentation explaining the purpose of each test. To address this issue, we need to:
- Update docstrings for al…
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- [x] Install the [latest Snakemake version](https://snakemake.readthedocs.io/en/stable/) (document which exactly)
- [x] Run the tutorial locally with it
- [x] Get to run the tutorial using SLURM ([…
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**Snakemake version**
8.15.2
**Describe the bug**
In previous versions of Snakemake (I was using 6.0.5.), I could log custom messages using `logger.info()`, and they would show up in both the ter…
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**Snakemake version**
v8.3.7
**Describe the bug**
Attempt to generate a Dockerfile with `snakemake --containerize` fails when the workflow has a global Conda directive.
**Logs**
The following…
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Is there a way to configure the executor so job logs to the log locations specified in my rules? (i.e. just like when running my workflow locally outside of SLURM). So instead of everything going to `…
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Capture workflow run crate provenance from Snakemake workflows similar to existing CWL. Note that WfExS already is doing something similar (but to figure out workflow structure)
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Hi @Xqua -
this looks like an interesting project. I'll have a look at it. In the meantime, can I ask you to mind the authorship of the snakemake workflow. It was conceived by ChristopherSchmied a…