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Hi Sourmash team,
Loving the better plot plug in. Is there an option to use continuous colors as opposed to discrete in the MDS plots? I'm not seeing a flag in the help page, but I might be missing…
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When benchmarking https://github.com/sourmash-bio/sourmash_plugin_branchwater/pull/430, I noticed a massive slowdown in manysearch. I took a few days to track it down using our conda-forge releases an…
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After running the pipeline I got this error:
```
Caused by:
ERROR ~ Error executing process > 'PATHOGENSURVEILLANCE:SKETCH_COMPARISON:SOURMASH_SKETCH_READS (1)'
Caused by:
Failed to create Co…
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In https://github.com/sourmash-bio/sourmash_plugin_branchwater/issues/381, we found a problem when using RocksDB inverted indexes with zip files.
Starting from https://github.com/sourmash-bio/sour…
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Hi!
I am grying out this tool now. I installed via conda, and am using it on a slurm run cluster with srun. Have asked for 10 cpus. I have a file list containing 8 plasmid fasta seqs. The plasmids …
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it's kind of cool 😆
see https://github.com/sourmash-bio/sourmash_plugin_branchwater/blob/a45163eff0951e430911d071b3957efe6c3c40e2/src/mastiff_manysearch.rs#L57
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Do we need here to update the Sourmash submodule to sync with `sourmash:latest`? Or this is just to check we can import Sourmash from the C++ generated header?
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### Description of feature
I was reading the SourMash documentation, and noticed it can be used for genome classification. Could be a nice one to have - there are pre-made databases available for bot…
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per comment on #3342, https://github.com/sourmash-bio/sourmash/pull/3342#discussion_r1801549808
@luizirber speaketh:
>I wonder if we can do (in a future PR, not this one) a new `.downsampled_iter(…
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searching 1,216,187 genomes from Genbank genomes, as of March 28, 2022 -
## sourmash gather:
| Sample | Time | Memory | num overlap | min set cov |
| -------- | -------- | -------- | -------- |…