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As already discussed multiple times with @LiNk-NY and in some other issues around, it would be nice to have all the import functions into a unique package. We think this would be a nice container for …
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Right now `spatialLIBD` is built upon the `SpatialExperiment` container class. There is also https://bioconductor.org/packages/SpatialFeatureExperiment/ that can support non-Visium spatially-resolved …
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There are now a number of different representations of spatial imaging data around.
I wonder whether `imgData(spe)$data` could also accommodate for lists of eg `EBImage::Image` or `RBioFormats::Annot…
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relates to #114 #116 #119 #123
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Hi I was wondering why the `imgData` slot of a `SpatialExperiment` restricts to columns
‘sample_id’, ‘image_id’, ‘data’, ‘scaleFactor’
I can imagine many scenarios where one would might want to …
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Discussed in #76, but someone must have introduced a regression somewhere down the line.
These lines of code:
https://github.com/drighelli/SpatialExperiment/blob/fbc21539ad3b8ec73c167b7bf4fff798…
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- Repository: https://github.com/YMa-lab/CARDspa
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- Repository: https://github.com/phipsonlab/jazzPanda
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Hi @estellad, thank you for getting in touch regarding adapting your workflow materials from the BC2 conference for inclusion in the book.
As we discussed by email, I'm opening some GitHub issues s…
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I was working with some SPE objects and noticed `cbind` has some unexpected behavior when subsetting spots from samples.
Specifically, I have started with a SPE containing multiple samples and with…