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Dear Community,
I have stitched CODEX images directly after the run and I segemented the image in QuPath. The result is a csv where each row is a cell with multiple columns of Marker Expressions, X…
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Hello, I'm interested in 3D reconstruction (mouse brain).
I have coronal mouse brain section images(.tif) by Axio slide scanner.
Images are already titled.
Because I want to stack these images on t…
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Hi team,
I wish to use DAPI as image background, overlapped with spatial cell plots (such as the one generated using data.plt.spatial_scatter()). The data is processed with cellbin.
The goal is se…
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Hi! Great work!
I am wondering how I can run a test on my own images?
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Full FOV 2P images are used for ophys-omfish registration and are going to start being generated by LIMS mesoscopes splitter module starting the week of Feb 13. We should think about how to QC them.
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I have many microscope images. i have stitched all the images but getting line between the two images and one image overlap with other due to which my stitched images seems to be blured. i am attachin…
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Hi @jcupitt,
When doing stitch operation with `merge` function, there are some artifacts and misalignment. I tried with `mosaic` function but i could not achieve a good result
Our system consist…
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I attempted to run this code, but I encountered a KeyError: 'top_ncc_first' in the `stitch_images` method. What can I do to resolve this error? I'm using Python 3.10.
```python
import os
import …
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A bit depth of 14 is standard for CZI images, and I have no problems opening original tiled images, or fused/unfused (according to Zen) stitched results at that bit depth.
When saving images in 8bit …
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I've downloaded the data and stitched the undistorted color, depth, and normal images using the MATLAB toolbox. What I can't seem to figure out, though, is how to apply the semantic labels from the 3D…