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Hi, I have the following questions to ask:
1. How to add new samples and contigs to an existing pan-genome, and whether it can be done directly using the _minigraph_ tool.
2. How to merge pan-genome…
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stLFR_GapCloser: ../readtool/stLFRReadHeader.hpp:63: void stLFRHeader::Init(const string&): Assertion `items_2.size() == 2' failed.
Aborted (core dumped)
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./split_barcode.sh R1_001.fastq.gz R2_001.fastq.gz
Step 1: Loading barcodes ...
Barcode_types: 1536 X 1536 X 1536 = 3623878656
Step 1 : Done
Step 2 : Check r2 length and barcode stype ...
Unknow …
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**[Original report](https://bitbucket.org/whatshap/whatshap/issue/228) by Pedro Almeida (Bitbucket: [Pedro Almeida](https://bitbucket.org/Pedro Almeida), ).**
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this example fails immediately:
$LRTK MKFQ -CF "./example/FQs/simulation/diploid_config" -IT stLFR
was able to temporarily resolve by editing simulate_reads_stLFR.py and commenting out these lin…
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Hello,
Thank you for developing this great tool. I understand this is not the primary function of TGS-GapCloser, but I want to combine two assemblies. Below are their basic stats:
```
Assembly …
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Hello All,
I'm attempting to scaffold some contigs using physlr. Here is the full error:
```
make: *** No rule to make target '../ssb_interleaved.fq.gz.k40-w32.n100-5000.c2-x.physlr.overlap.m85…
stLFR updated
2 years ago
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Hello,
I was trying to call variants with Aquila_stLFR using TELL-Seq reads (converted in 10x format). I tried to follow the guidelines `https://github.com/BGI-Qingdao/10X2stLFR` and the resulting fi…
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After this error, the instruction stopped running. Why？
My bam: Hg002_NA24385
My Ref: hg19
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