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BGI-Qingdao
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TGS-GapCloser
A gap-closing software tool that uses long reads to enhance genome assembly.
GNU General Public License v3.0
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Using different reads to fill the gap in genome
#87
DayTimeMouse
opened
2 weeks ago
0
tgsgapcloser: line 628: 1268093 Segmentation fault (core dumped)
#86
yuan102379
opened
1 month ago
0
Use pre-assembled contigs for gap filling
#85
chenzixi07
opened
1 month ago
1
/home/hjn/anaconda3/envs/genome/bin/tgsgapcloser: line 443: 115644 Killed
#84
Hanjiangna
opened
4 months ago
1
TGS reads input
#83
Hanjiangna
closed
3 months ago
2
TGS reads
#82
ad010902
closed
5 months ago
1
scaffold become truncated after TGSGapCandidate
#81
smallfishcui
opened
6 months ago
1
error: empty target sequences set!
#80
Marison-1
opened
6 months ago
2
error with racon
#79
zhengyanstu
opened
6 months ago
1
Why not output to folder?
#78
Isoris
opened
6 months ago
0
huge gaps not filled
#77
gforg34
closed
7 months ago
5
How to input multiple libraries
#76
bismarck1008
closed
7 months ago
0
How to check the correctness of filling gaps?
#75
luca-Wang
closed
5 months ago
1
ERROR: line 645: 16242 Aborted (core dumped)
#74
Bank-tidy
closed
9 months ago
4
tgsgapcloser: line 645: 3044102 Aborted (core dumped)
#73
MonsterLaplace
closed
5 months ago
4
insufficient memory when running mnimap2
#72
XiaoxingFan
closed
5 months ago
1
TGS-GapCloser：tgsgapcloser: line 374: 1545 Aborted
#71
suying77
closed
1 year ago
4
Can I use RagTag to assemble fasta with N and use TGS-GapCloser to fill holes?
#70
lanyunxin
closed
1 year ago
1
Pilon does not work within tgsgapclpser
#69
adlyabdalla
closed
1 year ago
2
getopt error for --minmap_arg and its options
#68
ChathumadaviE
closed
1 year ago
6
Can I use contigs files to fill in the gaps?
#67
yangchouxianyu
closed
1 year ago
2
Assertion `items.size() == 3'
#66
Johnsonzcode
closed
1 year ago
5
tgsgapcloser got Killed in step2.2 TGSGapCandidate
#65
JhinAir
closed
1 year ago
4
tgsgapcloser: line 645: 81794 Aborted (core dumped)
#64
Ssmile333
closed
1 year ago
5
unable to close gaps using pacbio CCS reads
#63
shailij246
closed
1 year ago
1
Can Tgsgaploser fill gaps in the genome at the chromosome level?
#62
XXH123a
closed
1 year ago
4
bin/tgsgapcloser: line 443: 3053 Bus error
#57
DiegoSafian
closed
1 year ago
1
step4.2 finish ,but only test.gapclose.fa.updated_scaff_infos file
#56
feiyu007
closed
1 year ago
2
TGS_GapCloser get killed in step 2.1 and step 4.1
#55
jtndr011
closed
1 year ago
32
TGS-gapcloser: Aaborted (core dumped)
#54
liuxin-21d
closed
2 years ago
3
Does TGS-GapCloser connect contigs with overlaps to generate a longer scaffold?
#53
shaobinzhong
closed
2 years ago
3
Passing parameters to RACON?
#52
cement-head
closed
2 years ago
1
chromosome much lengthened after filling gaps
#51
tinyfallen
closed
1 year ago
3
why use the reads as target
#50
tinyfallen
closed
2 years ago
7
tgsgapcloser: line 527: 1616435 Aborted
#49
LiaOb21
closed
2 years ago
4
Combine two assemblies
#48
oushujun
closed
2 years ago
3
Terminate called after throwing an instance of 'std::out_of_range' what(): map::at
#47
alexvasilikop
closed
2 years ago
1
Input NGS data.
#46
123chenshixin
closed
2 years ago
2
Is 10x-linked reads availble for TGS-GapCloser?
#45
ClarenceHsiang
closed
2 years ago
1
Potential misassembly?
#44
MattHuff
closed
2 years ago
1
Unable to move beyond mapping the reads
#43
amit4mchiba
closed
2 years ago
10
Memory problem
#42
leone93
closed
2 years ago
5
Can I use both long reads and NGS reads with error correction?
#41
CGsTree
closed
2 years ago
5
TGS-GapCloser支持Pacbio HiFi数据吗？
#40
Deng-Yuan
closed
2 years ago
1
Core dump
#39
markcharder
closed
3 years ago
2
big RAM required
#38
ardy20
closed
3 years ago
1
Conda invoke
#37
ardy20
closed
3 years ago
3
--minmap_arg arg not present in conda install
#36
charlesfeigin
closed
3 years ago
1
-g_check flag
#35
KyleEwart
closed
3 years ago
1
Rework flow of --ne option
#34
NTNguyen13
closed
3 years ago
2
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