BGI-Qingdao TGS-GapCloser issues

BGI-Qingdao / TGS-GapCloser

A gap-closing software tool that uses long reads to enhance genome assembly.

GNU General Public License v3.0

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issues

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Confusion about QS calculation

#89 shiyi-pan opened 3 weeks ago
0
`GLIBCXX_3.4.20' not found

#88 zhenzhenyang-psu opened 1 month ago
0
Using different reads to fill the gap in genome

#87 DayTimeMouse opened 2 months ago
0
tgsgapcloser: line 628: 1268093 Segmentation fault (core dumped)

#86 yuan102379 opened 2 months ago
3
Use pre-assembled contigs for gap filling

#85 chenzixi07 opened 3 months ago
1
/home/hjn/anaconda3/envs/genome/bin/tgsgapcloser: line 443: 115644 Killed

#84 Hanjiangna opened 5 months ago
2
TGS reads input

#83 Hanjiangna closed 5 months ago
2
TGS reads

#82 ad010902 closed 7 months ago
1
scaffold become truncated after TGSGapCandidate

#81 smallfishcui opened 7 months ago
1
error: empty target sequences set!

#80 Marison-1 opened 8 months ago
2
error with racon

#79 zhengyanstu opened 8 months ago
1
Why not output to folder?

#78 Isoris opened 8 months ago
0
huge gaps not filled

#77 gforg34 closed 8 months ago
5
How to input multiple libraries

#76 bismarck1008 closed 8 months ago
0
How to check the correctness of filling gaps?

#75 luca-Wang closed 7 months ago
1
ERROR: line 645: 16242 Aborted (core dumped)

#74 Bank-tidy closed 10 months ago
4
tgsgapcloser: line 645: 3044102 Aborted (core dumped)

#73 MonsterLaplace closed 7 months ago
4
insufficient memory when running mnimap2

#72 XiaoxingFan closed 7 months ago
1
TGS-GapCloser：tgsgapcloser: line 374: 1545 Aborted

#71 suying77 closed 1 year ago
4
Can I use RagTag to assemble fasta with N and use TGS-GapCloser to fill holes?

#70 lanyunxin closed 1 year ago
1
Pilon does not work within tgsgapclpser

#69 adlyabdalla closed 1 year ago
2
getopt error for --minmap_arg and its options

#68 ChathumadaviE closed 1 year ago
6
Can I use contigs files to fill in the gaps?

#67 yangchouxianyu closed 1 year ago
2
Assertion `items.size() == 3'

#66 Johnsonzcode closed 1 year ago
5
tgsgapcloser got Killed in step2.2 TGSGapCandidate

#65 JhinAir closed 1 year ago
4
tgsgapcloser: line 645: 81794 Aborted (core dumped)

#64 Ssmile333 closed 1 year ago
5
unable to close gaps using pacbio CCS reads

#63 shailij246 closed 1 year ago
1
Can Tgsgaploser fill gaps in the genome at the chromosome level?

#62 XXH123a closed 1 year ago
4
bin/tgsgapcloser: line 443: 3053 Bus error

#57 DiegoSafian closed 1 year ago
1
step4.2 finish ,but only test.gapclose.fa.updated_scaff_infos file

#56 feiyu007 closed 1 year ago
2
TGS_GapCloser get killed in step 2.1 and step 4.1

#55 jtndr011 closed 1 year ago
32
TGS-gapcloser: Aaborted (core dumped)

#54 liuxin-21d closed 2 years ago
3
Does TGS-GapCloser connect contigs with overlaps to generate a longer scaffold?

#53 shaobinzhong closed 2 years ago
3
Passing parameters to RACON?

#52 cement-head closed 2 years ago
1
chromosome much lengthened after filling gaps

#51 tinyfallen closed 1 year ago
3
why use the reads as target

#50 tinyfallen closed 2 years ago
7
tgsgapcloser: line 527: 1616435 Aborted

#49 LiaOb21 closed 2 years ago
4
Combine two assemblies

#48 oushujun closed 2 years ago
3
Terminate called after throwing an instance of 'std::out_of_range' what(): map::at

#47 alexvasilikop closed 2 years ago
1
Input NGS data.

#46 123chenshixin closed 2 years ago
2
Is 10x-linked reads availble for TGS-GapCloser?

#45 ClarenceHsiang closed 2 years ago
1
Potential misassembly?

#44 MattHuff closed 2 years ago
1
Unable to move beyond mapping the reads

#43 amit4mchiba closed 2 years ago
10
Memory problem

#42 leone93 closed 2 years ago
5
Can I use both long reads and NGS reads with error correction?

#41 CGsTree closed 2 years ago
5
TGS-GapCloser支持Pacbio HiFi数据吗？

#40 Deng-Yuan closed 2 years ago
1
Core dump

#39 markcharder closed 3 years ago
2
big RAM required

#38 ardy20 closed 3 years ago
1
Conda invoke

#37 ardy20 closed 3 years ago
3
--minmap_arg arg not present in conda install

#36 charlesfeigin closed 3 years ago
1